Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18911 | 5' | -60.8 | NC_004683.1 | + | 55480 | 0.67 | 0.390917 |
Target: 5'- -cUGCAGCUuguuGACGUacacaccgaacgccaGGCGCGGGCCu -3' miRNA: 3'- gcACGUCGGc---CUGCA---------------CCGCGUCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 51122 | 0.7 | 0.27307 |
Target: 5'- --cGCGGCCGGcGCGaagGGcCGCAaGGCCGa -3' miRNA: 3'- gcaCGUCGGCC-UGCa--CC-GCGU-CUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 48021 | 0.73 | 0.160325 |
Target: 5'- -cUGCAGCCGauGAgGUGGCGCcGGCCc -3' miRNA: 3'- gcACGUCGGC--CUgCACCGCGuCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 45532 | 0.66 | 0.432006 |
Target: 5'- aGUGCGGUgaGGGCGgucuUGGUGguGuCCGa -3' miRNA: 3'- gCACGUCGg-CCUGC----ACCGCguCuGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 44133 | 0.66 | 0.432006 |
Target: 5'- aGUaGCGGCCugccgGGACGuUGGCcaGCAGcGCCGc -3' miRNA: 3'- gCA-CGUCGG-----CCUGC-ACCG--CGUC-UGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 43135 | 0.72 | 0.182622 |
Target: 5'- gCGUGCGGCU--GCGUGGC-CGGAUCGa -3' miRNA: 3'- -GCACGUCGGccUGCACCGcGUCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 40112 | 0.67 | 0.378927 |
Target: 5'- aGacCAGCCGGACGcGGCcGC-GACCa -3' miRNA: 3'- gCacGUCGGCCUGCaCCG-CGuCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 39632 | 0.66 | 0.441267 |
Target: 5'- --cGCcGCCGGG-GUGGCGacccgaGGGCCGc -3' miRNA: 3'- gcaCGuCGGCCUgCACCGCg-----UCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 38564 | 0.66 | 0.432006 |
Target: 5'- --cGgGGCagGGAUGUGGCGUAGgugGCCGc -3' miRNA: 3'- gcaCgUCGg-CCUGCACCGCGUC---UGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 36127 | 0.67 | 0.390917 |
Target: 5'- --cGCGGCCGGugGcGGUcacgaaacugacccgGguGACCGc -3' miRNA: 3'- gcaCGUCGGCCugCaCCG---------------CguCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 34902 | 0.67 | 0.39613 |
Target: 5'- aCGUGCGGCaCGGGCuuGUuugcGGCGCuGGCa- -3' miRNA: 3'- -GCACGUCG-GCCUG--CA----CCGCGuCUGgc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 32885 | 0.67 | 0.39613 |
Target: 5'- --aGCAGCgCGGGCcagcccuUGGCcuGCGGGCCGa -3' miRNA: 3'- gcaCGUCG-GCCUGc------ACCG--CGUCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 32708 | 0.66 | 0.469708 |
Target: 5'- --cGCGGCguaGGacucgGCGUaGGCGCGGGCCc -3' miRNA: 3'- gcaCGUCGg--CC-----UGCA-CCGCGUCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 32506 | 1.09 | 0.000349 |
Target: 5'- uCGUGCAGCCGGACGUGGCGCAGACCGg -3' miRNA: 3'- -GCACGUCGGCCUGCACCGCGUCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 31500 | 0.66 | 0.469708 |
Target: 5'- --cGCucGCCugGGACcaGGCGUAGGCCGa -3' miRNA: 3'- gcaCGu-CGG--CCUGcaCCGCGUCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 31301 | 0.75 | 0.110417 |
Target: 5'- uGUGCAGCugCGGGcCGUGGCGguGGCgGc -3' miRNA: 3'- gCACGUCG--GCCU-GCACCGCguCUGgC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 28573 | 0.66 | 0.432006 |
Target: 5'- --aGCAGUCGGcuuugggggagGCGgGGUGuCGGACCGg -3' miRNA: 3'- gcaCGUCGGCC-----------UGCaCCGC-GUCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 28401 | 0.66 | 0.422858 |
Target: 5'- --cGCAGCCGG----GGCGCGGGCgGu -3' miRNA: 3'- gcaCGUCGGCCugcaCCGCGUCUGgC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 21554 | 0.67 | 0.387466 |
Target: 5'- aCGUGauccuGCUGGGCGgcGGCGguGGCgGg -3' miRNA: 3'- -GCACgu---CGGCCUGCa-CCGCguCUGgC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 20491 | 0.72 | 0.197283 |
Target: 5'- gGUGgGGCCGGugGUGG---AGGCCGg -3' miRNA: 3'- gCACgUCGGCCugCACCgcgUCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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