miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18958 3' -64.2 NC_004683.1 + 44935 0.66 0.298634
Target:  5'- gGCCaGCGCCUGCCGUCGaaacccggcucacgAaagacgaucugcuguGaGCGCCGAGu -3'
miRNA:   3'- -CGG-CGUGGGCGGCGGU--------------U---------------C-CGCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 4971 0.66 0.291017
Target:  5'- gGCCGguUCC-UCG-CAGGGCGCCGuGg -3'
miRNA:   3'- -CGGCguGGGcGGCgGUUCCGCGGCuC- -5'
18958 3' -64.2 NC_004683.1 + 25125 0.66 0.284225
Target:  5'- uGCCGguCCUgGCCGCCGucaccGGUGCgGGu -3'
miRNA:   3'- -CGGCguGGG-CGGCGGUu----CCGCGgCUc -5'
18958 3' -64.2 NC_004683.1 + 46625 0.66 0.291017
Target:  5'- cGCCGCGCCCGUCGaUCA----GCCGAc -3'
miRNA:   3'- -CGGCGUGGGCGGC-GGUuccgCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 25282 0.66 0.291017
Target:  5'- gGCCGCG-CUGCCggGCCugcAGGCGCacagCGAGu -3'
miRNA:   3'- -CGGCGUgGGCGG--CGGu--UCCGCG----GCUC- -5'
18958 3' -64.2 NC_004683.1 + 41871 0.66 0.30498
Target:  5'- gGUCGuCACUgGCagGCCGagGGGCGcCCGAGc -3'
miRNA:   3'- -CGGC-GUGGgCGg-CGGU--UCCGC-GGCUC- -5'
18958 3' -64.2 NC_004683.1 + 53641 0.66 0.291017
Target:  5'- cGCCGCGaccuggCCGCgGCUGAGGCuGCacucacaGAGg -3'
miRNA:   3'- -CGGCGUg-----GGCGgCGGUUCCG-CGg------CUC- -5'
18958 3' -64.2 NC_004683.1 + 12991 0.66 0.312152
Target:  5'- gGCUGCGCgagCGCgGCUuccugccGGGCGCCGGu -3'
miRNA:   3'- -CGGCGUGg--GCGgCGGu------UCCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 44855 0.66 0.319452
Target:  5'- cGCCGUggugGCCCgGCCuggagGCCGA-GUGCCGAu -3'
miRNA:   3'- -CGGCG----UGGG-CGG-----CGGUUcCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 23720 0.66 0.291017
Target:  5'- gGCgGCACCgGCgGCgGcaccaccccGGCGCCGAc -3'
miRNA:   3'- -CGgCGUGGgCGgCGgUu--------CCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 46437 0.66 0.284225
Target:  5'- uGCCGCaACCaggucuuggaGCCGCUGuuccguccGGcCGCCGAGa -3'
miRNA:   3'- -CGGCG-UGGg---------CGGCGGUu-------CC-GCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 7313 0.66 0.284225
Target:  5'- aCCGCGCCCccaaCCGCgGcGGUGCUGGc -3'
miRNA:   3'- cGGCGUGGGc---GGCGgUuCCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 25873 0.66 0.312152
Target:  5'- gGCUGCgGCUCGgCGUCGAGuuCGCCGGGc -3'
miRNA:   3'- -CGGCG-UGGGCgGCGGUUCc-GCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 20428 0.66 0.319452
Target:  5'- gGCgGCACCgGCggugcagggGCCAccGCGCCGAu -3'
miRNA:   3'- -CGgCGUGGgCGg--------CGGUucCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 18961 0.66 0.326878
Target:  5'- gGCCGCcuCCUGCgGaUCGaagucGGGCGCCGuGa -3'
miRNA:   3'- -CGGCGu-GGGCGgC-GGU-----UCCGCGGCuC- -5'
18958 3' -64.2 NC_004683.1 + 8547 0.66 0.326878
Target:  5'- aCCGCACCgGCCugaucGCCGuGGCGUuccgCGAc -3'
miRNA:   3'- cGGCGUGGgCGG-----CGGUuCCGCG----GCUc -5'
18958 3' -64.2 NC_004683.1 + 55171 0.66 0.284225
Target:  5'- aGCCGCAUaCGUCGCCGuagcggaacgAGGUgagGCCGGc -3'
miRNA:   3'- -CGGCGUGgGCGGCGGU----------UCCG---CGGCUc -5'
18958 3' -64.2 NC_004683.1 + 4873 0.66 0.30498
Target:  5'- aGCCGCcuggaGCgCGCCGCCGAacuGGC-CCGc- -3'
miRNA:   3'- -CGGCG-----UGgGCGGCGGUU---CCGcGGCuc -5'
18958 3' -64.2 NC_004683.1 + 41227 0.66 0.320189
Target:  5'- cGCCGCcaagcauaaGCCCGUgCGCCugcgugacuggcuguGGGCGCCc-- -3'
miRNA:   3'- -CGGCG---------UGGGCG-GCGGu--------------UCCGCGGcuc -5'
18958 3' -64.2 NC_004683.1 + 27211 0.66 0.284225
Target:  5'- uGCCGCGCUgGCgCGUCucgauGcCGCCGAGc -3'
miRNA:   3'- -CGGCGUGGgCG-GCGGuu---CcGCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.