miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18958 3' -64.2 NC_004683.1 + 248 0.67 0.246093
Target:  5'- cGCCGCugCUGcCCGCgGcGGgGCUGGu -3'
miRNA:   3'- -CGGCGugGGC-GGCGgUuCCgCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 506 0.67 0.264603
Target:  5'- cGCCGCGCCagccaCCGCCu--GCGCCa-- -3'
miRNA:   3'- -CGGCGUGGgc---GGCGGuucCGCGGcuc -5'
18958 3' -64.2 NC_004683.1 + 1127 0.67 0.25831
Target:  5'- uGCUGCACaaGCuCGUCAAGcGCgGCCGGu -3'
miRNA:   3'- -CGGCGUGggCG-GCGGUUC-CG-CGGCUc -5'
18958 3' -64.2 NC_004683.1 + 1446 0.66 0.312152
Target:  5'- aGCCgagGCGCUCGCgGCCGAacucGGCGggaUCGAGc -3'
miRNA:   3'- -CGG---CGUGGGCGgCGGUU----CCGC---GGCUC- -5'
18958 3' -64.2 NC_004683.1 + 1657 0.72 0.108541
Target:  5'- -aCGUugCCGCCGC--GGGCcGCCGGGa -3'
miRNA:   3'- cgGCGugGGCGGCGguUCCG-CGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 2003 0.78 0.038709
Target:  5'- uGCCGCACCgGCUGUCGAGGUGUgGGa -3'
miRNA:   3'- -CGGCGUGGgCGGCGGUUCCGCGgCUc -5'
18958 3' -64.2 NC_004683.1 + 2207 0.68 0.22867
Target:  5'- gGCCaCGCCCGCCaccaCCAGGGCGauggccaCGAc -3'
miRNA:   3'- -CGGcGUGGGCGGc---GGUUCCGCg------GCUc -5'
18958 3' -64.2 NC_004683.1 + 3825 0.68 0.234359
Target:  5'- aCCGCGCCguaGCCGUCGAGGgugagGCCGu- -3'
miRNA:   3'- cGGCGUGGg--CGGCGGUUCCg----CGGCuc -5'
18958 3' -64.2 NC_004683.1 + 4873 0.66 0.30498
Target:  5'- aGCCGCcuggaGCgCGCCGCCGAacuGGC-CCGc- -3'
miRNA:   3'- -CGGCG-----UGgGCGGCGGUU---CCGcGGCuc -5'
18958 3' -64.2 NC_004683.1 + 4971 0.66 0.291017
Target:  5'- gGCCGguUCC-UCG-CAGGGCGCCGuGg -3'
miRNA:   3'- -CGGCguGGGcGGCgGUUCCGCGGCuC- -5'
18958 3' -64.2 NC_004683.1 + 5014 0.75 0.070655
Target:  5'- cGCCGCuggCCGCCGCUcuGAGGCuuGCCGAu -3'
miRNA:   3'- -CGGCGug-GGCGGCGG--UUCCG--CGGCUc -5'
18958 3' -64.2 NC_004683.1 + 5570 0.67 0.264603
Target:  5'- aCUGCA-CgGCCGCCGAGGacaCGCCGuGc -3'
miRNA:   3'- cGGCGUgGgCGGCGGUUCC---GCGGCuC- -5'
18958 3' -64.2 NC_004683.1 + 5748 0.72 0.115661
Target:  5'- aCCGCGCucgcgggcaCCGCCGCCGAGaucgcuccagucacCGCCGAGa -3'
miRNA:   3'- cGGCGUG---------GGCGGCGGUUCc-------------GCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 5837 0.88 0.00651
Target:  5'- cGCCGCGCggcaCCGCCGCCAAGGCGCCu-- -3'
miRNA:   3'- -CGGCGUG----GGCGGCGGUUCCGCGGcuc -5'
18958 3' -64.2 NC_004683.1 + 6208 0.7 0.16914
Target:  5'- aGCCGCgcgACCCGUUggGCCGGcgguuGGUGCCGAa -3'
miRNA:   3'- -CGGCG---UGGGCGG--CGGUU-----CCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 6426 0.67 0.251531
Target:  5'- cGCgCGCACCUGUUcgaaccgGUCGAGGUcaauGCCGAGc -3'
miRNA:   3'- -CG-GCGUGGGCGG-------CGGUUCCG----CGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 6467 0.67 0.25831
Target:  5'- uGUCGCugUCGUCGaacAGGuCGCCGGGg -3'
miRNA:   3'- -CGGCGugGGCGGCgguUCC-GCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 6468 0.68 0.234359
Target:  5'- cGUCGCGCCaGCgucgaggaCGCCA--GCGCCGAGc -3'
miRNA:   3'- -CGGCGUGGgCG--------GCGGUucCGCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 6540 0.78 0.044419
Target:  5'- cCCGCGCCCGCaaCCAcacAGGCGCCGGc -3'
miRNA:   3'- cGGCGUGGGCGgcGGU---UCCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 6593 0.69 0.207073
Target:  5'- aGCCuGacgACCUGcCCGCCAAGGUGCgCGGc -3'
miRNA:   3'- -CGG-Cg--UGGGC-GGCGGUUCCGCG-GCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.