miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18958 3' -64.2 NC_004683.1 + 50975 1.1 0.000139
Target:  5'- gGCCGCACCCGCCGCCAAGGCGCCGAGg -3'
miRNA:   3'- -CGGCGUGGGCGGCGGUUCCGCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 5837 0.88 0.00651
Target:  5'- cGCCGCGCggcaCCGCCGCCAAGGCGCCu-- -3'
miRNA:   3'- -CGGCGUG----GGCGGCGGUUCCGCGGcuc -5'
18958 3' -64.2 NC_004683.1 + 12795 0.8 0.027781
Target:  5'- -aCGCGcCCCGCgCGCCGAGGaUGCCGAGg -3'
miRNA:   3'- cgGCGU-GGGCG-GCGGUUCC-GCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 2003 0.78 0.038709
Target:  5'- uGCCGCACCgGCUGUCGAGGUGUgGGa -3'
miRNA:   3'- -CGGCGUGGgCGGCGGUUCCGCGgCUc -5'
18958 3' -64.2 NC_004683.1 + 8243 0.78 0.042043
Target:  5'- gGCCGCgGCCuuCGCgGCCucGGCGCCGAGc -3'
miRNA:   3'- -CGGCG-UGG--GCGgCGGuuCCGCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 6540 0.78 0.044419
Target:  5'- cCCGCGCCCGCaaCCAcacAGGCGCCGGc -3'
miRNA:   3'- cGGCGUGGGCGgcGGU---UCCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 52318 0.77 0.048232
Target:  5'- uGCCGCGCCgGCCcgggucGCCGAGGCGgacCCGAc -3'
miRNA:   3'- -CGGCGUGGgCGG------CGGUUCCGC---GGCUc -5'
18958 3' -64.2 NC_004683.1 + 44713 0.77 0.049302
Target:  5'- -aCGCGCCCGCCgacguaccacuacGCCGAGGCcgacaagcucgucGCCGAGa -3'
miRNA:   3'- cgGCGUGGGCGG-------------CGGUUCCG-------------CGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 41129 0.76 0.055307
Target:  5'- aGCUGCugaucaGCUCGCCGgCGagguAGGCGCCGAGg -3'
miRNA:   3'- -CGGCG------UGGGCGGCgGU----UCCGCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 51684 0.76 0.061682
Target:  5'- aCCGCACgCCGCgGuUCGAGGCaGCCGAGc -3'
miRNA:   3'- cGGCGUG-GGCGgC-GGUUCCG-CGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 5014 0.75 0.070655
Target:  5'- cGCCGCuggCCGCCGCUcuGAGGCuuGCCGAu -3'
miRNA:   3'- -CGGCGug-GGCGGCGG--UUCCG--CGGCUc -5'
18958 3' -64.2 NC_004683.1 + 25641 0.75 0.074585
Target:  5'- uGCCGUugCCGaCCgcgGCCAGGGCGgCGAc -3'
miRNA:   3'- -CGGCGugGGC-GG---CGGUUCCGCgGCUc -5'
18958 3' -64.2 NC_004683.1 + 6744 0.74 0.085348
Target:  5'- aGCgGCGCgCCGCgGCCAGcacGGCGUCGAu -3'
miRNA:   3'- -CGgCGUG-GGCGgCGGUU---CCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 41760 0.74 0.087437
Target:  5'- cCCGCGCgucgauaCCGCCGCCGA--CGCCGAGa -3'
miRNA:   3'- cGGCGUG-------GGCGGCGGUUccGCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 15105 0.73 0.09758
Target:  5'- uGCCGCGguagUCCG-CGCCGAGGCG-CGAGu -3'
miRNA:   3'- -CGGCGU----GGGCgGCGGUUCCGCgGCUC- -5'
18958 3' -64.2 NC_004683.1 + 52004 0.73 0.100218
Target:  5'- cUCGCGCCCGUCGaCCAucacguAGGUGCUGAu -3'
miRNA:   3'- cGGCGUGGGCGGC-GGU------UCCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 7030 0.72 0.108541
Target:  5'- aGCUGCaccaccGCCCGCCGCCAGucGGcCGCCu-- -3'
miRNA:   3'- -CGGCG------UGGGCGGCGGUU--CC-GCGGcuc -5'
18958 3' -64.2 NC_004683.1 + 1657 0.72 0.108541
Target:  5'- -aCGUugCCGCCGC--GGGCcGCCGGGa -3'
miRNA:   3'- cgGCGugGGCGGCGguUCCG-CGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 56780 0.72 0.114445
Target:  5'- aCCGCAgCCGCUaCCGAGGUcCCGAGc -3'
miRNA:   3'- cGGCGUgGGCGGcGGUUCCGcGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 5748 0.72 0.115661
Target:  5'- aCCGCGCucgcgggcaCCGCCGCCGAGaucgcuccagucacCGCCGAGa -3'
miRNA:   3'- cGGCGUG---------GGCGGCGGUUCc-------------GCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.