miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18958 3' -64.2 NC_004683.1 + 51872 0.69 0.187262
Target:  5'- aGCUGCACCa-CCGCgCGAuccgugauGGCGCCGGa -3'
miRNA:   3'- -CGGCGUGGgcGGCG-GUU--------CCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 51734 0.7 0.156191
Target:  5'- gGCCGCgaccaguGCCgCGCCGCCcu--CGCCGAGu -3'
miRNA:   3'- -CGGCG-------UGG-GCGGCGGuuccGCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 8153 0.7 0.164438
Target:  5'- -aCGCGCUCGgCGCCGAGGCcgcgaagGCCGcGg -3'
miRNA:   3'- cgGCGUGGGCgGCGGUUCCG-------CGGCuC- -5'
18958 3' -64.2 NC_004683.1 + 7855 0.69 0.177996
Target:  5'- cGCCGUgucggACCCGacaccCCGaCCAAGGCGCaGGGc -3'
miRNA:   3'- -CGGCG-----UGGGC-----GGC-GGUUCCGCGgCUC- -5'
18958 3' -64.2 NC_004683.1 + 18129 0.69 0.177996
Target:  5'- cGCCgGCACcuaCCGCaCGCCGuGGCgGCCGGa -3'
miRNA:   3'- -CGG-CGUG---GGCG-GCGGUuCCG-CGGCUc -5'
18958 3' -64.2 NC_004683.1 + 39612 0.69 0.181192
Target:  5'- --gGCGCCCguuccggggugggcGCCGCCGGGGUGgcgacCCGAGg -3'
miRNA:   3'- cggCGUGGG--------------CGGCGGUUCCGC-----GGCUC- -5'
18958 3' -64.2 NC_004683.1 + 41185 0.69 0.182114
Target:  5'- uCCGauauggaCACCCGCCgacgcgGCgAAGGcCGCCGAGg -3'
miRNA:   3'- cGGC-------GUGGGCGG------CGgUUCC-GCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 41312 0.69 0.182577
Target:  5'- aCCGCgccACCCGCCcagGCUGAcGGCGUCGAc -3'
miRNA:   3'- cGGCG---UGGGCGG---CGGUU-CCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 39162 0.69 0.187262
Target:  5'- -aCGCACCgcuCGUCGCCAAG--GCCGAGg -3'
miRNA:   3'- cgGCGUGG---GCGGCGGUUCcgCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 15851 0.71 0.144896
Target:  5'- uGCUGCacggcaacaucgGCCagGCCGCUGAGGCcGCUGAGa -3'
miRNA:   3'- -CGGCG------------UGGg-CGGCGGUUCCG-CGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 53590 0.71 0.136474
Target:  5'- gGCCGCACCgccggccgcgucuuCGCCGCCGAgcugcGGCG-CGAu -3'
miRNA:   3'- -CGGCGUGG--------------GCGGCGGUU-----CCGCgGCUc -5'
18958 3' -64.2 NC_004683.1 + 40785 0.71 0.130541
Target:  5'- cGCCGCgACCgacgCGCuCGCCGAcGGCgagGCCGAGu -3'
miRNA:   3'- -CGGCG-UGG----GCG-GCGGUU-CCG---CGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 5837 0.88 0.00651
Target:  5'- cGCCGCGCggcaCCGCCGCCAAGGCGCCu-- -3'
miRNA:   3'- -CGGCGUG----GGCGGCGGUUCCGCGGcuc -5'
18958 3' -64.2 NC_004683.1 + 2003 0.78 0.038709
Target:  5'- uGCCGCACCgGCUGUCGAGGUGUgGGa -3'
miRNA:   3'- -CGGCGUGGgCGGCGGUUCCGCGgCUc -5'
18958 3' -64.2 NC_004683.1 + 6540 0.78 0.044419
Target:  5'- cCCGCGCCCGCaaCCAcacAGGCGCCGGc -3'
miRNA:   3'- cGGCGUGGGCGgcGGU---UCCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 44713 0.77 0.049302
Target:  5'- -aCGCGCCCGCCgacguaccacuacGCCGAGGCcgacaagcucgucGCCGAGa -3'
miRNA:   3'- cgGCGUGGGCGG-------------CGGUUCCG-------------CGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 51684 0.76 0.061682
Target:  5'- aCCGCACgCCGCgGuUCGAGGCaGCCGAGc -3'
miRNA:   3'- cGGCGUG-GGCGgC-GGUUCCG-CGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 41760 0.74 0.087437
Target:  5'- cCCGCGCgucgauaCCGCCGCCGA--CGCCGAGa -3'
miRNA:   3'- cGGCGUG-------GGCGGCGGUUccGCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 56780 0.72 0.114445
Target:  5'- aCCGCAgCCGCUaCCGAGGUcCCGAGc -3'
miRNA:   3'- cGGCGUgGGCGGcGGUUCCGcGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 5748 0.72 0.115661
Target:  5'- aCCGCGCucgcgggcaCCGCCGCCGAGaucgcuccagucacCGCCGAGa -3'
miRNA:   3'- cGGCGUG---------GGCGGCGGUUCc-------------GCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.