miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18962 5' -54.3 NC_004683.1 + 56680 0.66 0.818327
Target:  5'- gGCaaGGCGCUgugcuggcggUGCAUCGaGAACGGACu -3'
miRNA:   3'- -CGagCUGCGG----------AUGUGGC-CUUGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 55772 0.67 0.749762
Target:  5'- --aCGACGCCaGCGuuGaGcAGCGGACGg -3'
miRNA:   3'- cgaGCUGCGGaUGUggC-C-UUGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 54062 0.73 0.396237
Target:  5'- cGCUcCGACGCCaACGCCGGugUGGAgCGu -3'
miRNA:   3'- -CGA-GCUGCGGaUGUGGCCuuGUCU-GC- -5'
18962 5' -54.3 NC_004683.1 + 52334 0.73 0.42209
Target:  5'- aGCUCGuGCGCCUuggugccGCGCCGGcccgggucgccgaGGCGGACc -3'
miRNA:   3'- -CGAGC-UGCGGA-------UGUGGCC-------------UUGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 52275 1.1 0.001249
Target:  5'- aGCUCGACGCCUACACCGGAACAGACGc -3'
miRNA:   3'- -CGAGCUGCGGAUGUGGCCUUGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 51558 0.67 0.718388
Target:  5'- cGCgUCGuaguACGCCUGCaaGCCGucGAGCAGAuCGg -3'
miRNA:   3'- -CG-AGC----UGCGGAUG--UGGC--CUUGUCU-GC- -5'
18962 5' -54.3 NC_004683.1 + 51059 0.73 0.405353
Target:  5'- cCUCGGCGCCUuggcggcggguGCgGCCGGAGCGcugugcgcGACGg -3'
miRNA:   3'- cGAGCUGCGGA-----------UG-UGGCCUUGU--------CUGC- -5'
18962 5' -54.3 NC_004683.1 + 48465 0.69 0.648208
Target:  5'- gGCUCGGCGCUgaugaaucgcacgGCAgCCGGAgugucgaGCAGcGCGg -3'
miRNA:   3'- -CGAGCUGCGGa------------UGU-GGCCU-------UGUC-UGC- -5'
18962 5' -54.3 NC_004683.1 + 48313 0.67 0.749762
Target:  5'- gGCUCGGUGUCUcCACCGaGAACcagaAGugGg -3'
miRNA:   3'- -CGAGCUGCGGAuGUGGC-CUUG----UCugC- -5'
18962 5' -54.3 NC_004683.1 + 46632 0.67 0.718388
Target:  5'- cGCUCGAUGCCgGC-CCGGAucc-GCGc -3'
miRNA:   3'- -CGAGCUGCGGaUGuGGCCUugucUGC- -5'
18962 5' -54.3 NC_004683.1 + 45833 0.68 0.707747
Target:  5'- aCUCGAacCGCCaGCGCCacaGAACAGAuCGg -3'
miRNA:   3'- cGAGCU--GCGGaUGUGGc--CUUGUCU-GC- -5'
18962 5' -54.3 NC_004683.1 + 45219 0.66 0.818327
Target:  5'- cGCUCGccgagaucgucaGCGCCUcuagcgacaGCAaaGGAuCGGGCGg -3'
miRNA:   3'- -CGAGC------------UGCGGA---------UGUggCCUuGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 41036 0.72 0.452842
Target:  5'- cCUCGGCGCCUACcucGCCGGcgAGCuGAUc -3'
miRNA:   3'- cGAGCUGCGGAUG---UGGCC--UUGuCUGc -5'
18962 5' -54.3 NC_004683.1 + 40999 0.67 0.755919
Target:  5'- aGCUCGGCGCCcgggucggauCCGGGGauguaguaAGGCGa -3'
miRNA:   3'- -CGAGCUGCGGaugu------GGCCUUg-------UCUGC- -5'
18962 5' -54.3 NC_004683.1 + 40348 0.72 0.462701
Target:  5'- uCUCGACGCCUcgggccugaccgACGCCGGucucACuGAUGa -3'
miRNA:   3'- cGAGCUGCGGA------------UGUGGCCu---UGuCUGC- -5'
18962 5' -54.3 NC_004683.1 + 40324 0.66 0.809027
Target:  5'- -aUCGacgcGCGCCUGCAgcUCGGcGCGGGCc -3'
miRNA:   3'- cgAGC----UGCGGAUGU--GGCCuUGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 40293 0.67 0.75694
Target:  5'- uGCUCGGCGUCguagGCagcccgggcgaacuGCUGGAGCucGAUGg -3'
miRNA:   3'- -CGAGCUGCGGa---UG--------------UGGCCUUGu-CUGC- -5'
18962 5' -54.3 NC_004683.1 + 39693 0.77 0.22493
Target:  5'- --gCGGCGCCcACcCCGGAACGGGCGc -3'
miRNA:   3'- cgaGCUGCGGaUGuGGCCUUGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 39608 0.66 0.789891
Target:  5'- uCUgGGCGCCcguuCCGGggUGGGCGc -3'
miRNA:   3'- cGAgCUGCGGauguGGCCuuGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 39138 0.7 0.566588
Target:  5'- uGCUCGAgGCCcGCAUCGaGAA-GGACGc -3'
miRNA:   3'- -CGAGCUgCGGaUGUGGC-CUUgUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.