miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18963 5' -52.7 NC_004683.1 + 24771 0.73 0.523005
Target:  5'- cGGCGCGCGGCcauGGcCUCGaUGACGUcGGg -3'
miRNA:   3'- cCCGUGCGUUG---CUuGAGC-ACUGCA-CC- -5'
18963 5' -52.7 NC_004683.1 + 52039 0.67 0.853826
Target:  5'- aGGCGCGuCAGCGGAUccacugCG-GGCGUGc -3'
miRNA:   3'- cCCGUGC-GUUGCUUGa-----GCaCUGCACc -5'
18963 5' -52.7 NC_004683.1 + 1210 0.66 0.865336
Target:  5'- cGGcCGCGCuuGACGAGCUUgugcagcaccucggaGUcGGCGUGGc -3'
miRNA:   3'- cCC-GUGCG--UUGCUUGAG---------------CA-CUGCACC- -5'
18963 5' -52.7 NC_004683.1 + 33054 0.66 0.899729
Target:  5'- cGGUGCGCAACGuugccgcACUCGUcGACc-GGa -3'
miRNA:   3'- cCCGUGCGUUGCu------UGAGCA-CUGcaCC- -5'
18963 5' -52.7 NC_004683.1 + 51714 0.71 0.609286
Target:  5'- cGGCAgCGCGaccGCGGGCUCGggGGCG-GGc -3'
miRNA:   3'- cCCGU-GCGU---UGCUUGAGCa-CUGCaCC- -5'
18963 5' -52.7 NC_004683.1 + 5729 0.71 0.620248
Target:  5'- cGGCgaacagcaGCGCGACGGuCUCGgUGACGuUGGc -3'
miRNA:   3'- cCCG--------UGCGUUGCUuGAGC-ACUGC-ACC- -5'
18963 5' -52.7 NC_004683.1 + 24737 0.7 0.664104
Target:  5'- uGGUGCGCAgcaggcgcGCGAACUCGgcGGCcUGGg -3'
miRNA:   3'- cCCGUGCGU--------UGCUUGAGCa-CUGcACC- -5'
18963 5' -52.7 NC_004683.1 + 41562 0.69 0.728771
Target:  5'- aGGGCAgaaGaCAAUGAcGCUCGUGGCGa-- -3'
miRNA:   3'- -CCCGUg--C-GUUGCU-UGAGCACUGCacc -5'
18963 5' -52.7 NC_004683.1 + 47972 0.67 0.822208
Target:  5'- gGGGCugGC--UGGACUCagcuucgugcagcccGUGACG-GGa -3'
miRNA:   3'- -CCCGugCGuuGCUUGAG---------------CACUGCaCC- -5'
18963 5' -52.7 NC_004683.1 + 46127 0.67 0.8436
Target:  5'- gGGGCACGUcccaca-UCGUGGCGcGGg -3'
miRNA:   3'- -CCCGUGCGuugcuugAGCACUGCaCC- -5'
18963 5' -52.7 NC_004683.1 + 24043 0.67 0.826764
Target:  5'- gGGGCACGUAGCcguGCUCGacgagcuUGGCcaGGg -3'
miRNA:   3'- -CCCGUGCGUUGcu-UGAGC-------ACUGcaCC- -5'
18963 5' -52.7 NC_004683.1 + 318 0.69 0.739279
Target:  5'- cGGGCA-GCAGCGGcggcaucgcggcGCUCG-GA-GUGGg -3'
miRNA:   3'- -CCCGUgCGUUGCU------------UGAGCaCUgCACC- -5'
18963 5' -52.7 NC_004683.1 + 15299 0.72 0.554943
Target:  5'- cGGGCGCgGCAGCGAACUUGa-ACGUu- -3'
miRNA:   3'- -CCCGUG-CGUUGCUUGAGCacUGCAcc -5'
18963 5' -52.7 NC_004683.1 + 52248 0.67 0.827668
Target:  5'- cGGCagaucGCGCAACGugucacgcAGCUgCGUGAUGUGc -3'
miRNA:   3'- cCCG-----UGCGUUGC--------UUGA-GCACUGCACc -5'
18963 5' -52.7 NC_004683.1 + 33500 0.72 0.565721
Target:  5'- uGGUGCGguACGAGCUCaucguggacGUcGGCGUGGu -3'
miRNA:   3'- cCCGUGCguUGCUUGAG---------CA-CUGCACC- -5'
18963 5' -52.7 NC_004683.1 + 24355 0.69 0.728771
Target:  5'- cGGGCccaugaGCGCGGCGuagGACUCGgcguaGGCGcGGg -3'
miRNA:   3'- -CCCG------UGCGUUGC---UUGAGCa----CUGCaCC- -5'
18963 5' -52.7 NC_004683.1 + 12314 0.67 0.841864
Target:  5'- cGGCACGC--CGGGCgcucccgccccggCG-GGCGUGGg -3'
miRNA:   3'- cCCGUGCGuuGCUUGa------------GCaCUGCACC- -5'
18963 5' -52.7 NC_004683.1 + 10418 0.67 0.857161
Target:  5'- cGGCGCGCuuuGCGAcagcgguggcagaacGCUCGUcGAgCGUcGGu -3'
miRNA:   3'- cCCGUGCGu--UGCU---------------UGAGCA-CU-GCA-CC- -5'
18963 5' -52.7 NC_004683.1 + 56249 0.72 0.587429
Target:  5'- uGGGCGCgGUGGCcAGCgcggCGUGAgCGUGGg -3'
miRNA:   3'- -CCCGUG-CGUUGcUUGa---GCACU-GCACC- -5'
18963 5' -52.7 NC_004683.1 + 44494 0.7 0.653158
Target:  5'- -uGCGCGCGACGAcUUCGgUGGCGUa- -3'
miRNA:   3'- ccCGUGCGUUGCUuGAGC-ACUGCAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.