miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18967 3' -50.5 NC_004683.1 + 1406 0.66 0.948161
Target:  5'- cGAUCGAGGacgccccgcUGAUCucgaaaGACGGCuGGGc -3'
miRNA:   3'- aCUAGCUUC---------ACUAGuag---CUGCCG-CUC- -5'
18967 3' -50.5 NC_004683.1 + 26867 0.66 0.948161
Target:  5'- gGAUCGAGGuUGAacUCGaugcugaCGACGGCGu- -3'
miRNA:   3'- aCUAGCUUC-ACU--AGUa------GCUGCCGCuc -5'
18967 3' -50.5 NC_004683.1 + 32443 0.66 0.943319
Target:  5'- ---cCGGAGUcccuGGUCAUCG-CGGCGcAGa -3'
miRNA:   3'- acuaGCUUCA----CUAGUAGCuGCCGC-UC- -5'
18967 3' -50.5 NC_004683.1 + 52892 0.66 0.943319
Target:  5'- aGAUCGcugaugcugaacGAGUacUCGUCGGCcucGGCGAGc -3'
miRNA:   3'- aCUAGC------------UUCAcuAGUAGCUG---CCGCUC- -5'
18967 3' -50.5 NC_004683.1 + 14337 0.66 0.943319
Target:  5'- cGAUCGAGGcGAUgAUgaGGCGGCa-- -3'
miRNA:   3'- aCUAGCUUCaCUAgUAg-CUGCCGcuc -5'
18967 3' -50.5 NC_004683.1 + 29703 0.66 0.943319
Target:  5'- -cGUCGAAGUcGA-CAaCGACGGCGu- -3'
miRNA:   3'- acUAGCUUCA-CUaGUaGCUGCCGCuc -5'
18967 3' -50.5 NC_004683.1 + 20085 0.66 0.938191
Target:  5'- -aGUCGAuGGUGGccucggcggUAUCGACGGCGGc -3'
miRNA:   3'- acUAGCU-UCACUa--------GUAGCUGCCGCUc -5'
18967 3' -50.5 NC_004683.1 + 51385 0.66 0.938191
Target:  5'- -cGUUGAGGU--UCAUCGGCGGCc-- -3'
miRNA:   3'- acUAGCUUCAcuAGUAGCUGCCGcuc -5'
18967 3' -50.5 NC_004683.1 + 24398 0.66 0.932775
Target:  5'- cGA-CGAGGccaccgcggcGAUCGUCGgcuACGGCGGGa -3'
miRNA:   3'- aCUaGCUUCa---------CUAGUAGC---UGCCGCUC- -5'
18967 3' -50.5 NC_004683.1 + 263 0.66 0.927069
Target:  5'- cGG-CGggGcUGGUCG-CGACGGUGGu -3'
miRNA:   3'- aCUaGCuuC-ACUAGUaGCUGCCGCUc -5'
18967 3' -50.5 NC_004683.1 + 29157 0.67 0.921074
Target:  5'- cGAUCuGGGUGAugUCAUCGcuaccACGGCGc- -3'
miRNA:   3'- aCUAGcUUCACU--AGUAGC-----UGCCGCuc -5'
18967 3' -50.5 NC_004683.1 + 49123 0.67 0.921074
Target:  5'- uUGGUCGAcGUGcAUCAgUCGGCGccguucugcugcGCGAGc -3'
miRNA:   3'- -ACUAGCUuCAC-UAGU-AGCUGC------------CGCUC- -5'
18967 3' -50.5 NC_004683.1 + 7817 0.67 0.914789
Target:  5'- aUGGUaagCGAaccguGGaGAUCGaCGACGGCGAGu -3'
miRNA:   3'- -ACUA---GCU-----UCaCUAGUaGCUGCCGCUC- -5'
18967 3' -50.5 NC_004683.1 + 36112 0.67 0.914789
Target:  5'- aGGUCG-GGcGAucUCGUCGAuCGGCGAu -3'
miRNA:   3'- aCUAGCuUCaCU--AGUAGCU-GCCGCUc -5'
18967 3' -50.5 NC_004683.1 + 46600 0.67 0.901358
Target:  5'- cGGUCGAGGg---CcgCGACGGCaAGg -3'
miRNA:   3'- aCUAGCUUCacuaGuaGCUGCCGcUC- -5'
18967 3' -50.5 NC_004683.1 + 2669 0.67 0.901358
Target:  5'- --cUCGuacuGGacGAUCGUUGACGGUGAGu -3'
miRNA:   3'- acuAGCu---UCa-CUAGUAGCUGCCGCUC- -5'
18967 3' -50.5 NC_004683.1 + 21416 0.67 0.894217
Target:  5'- cGAUCGGGaUGGUCAcCGACaGCGGc -3'
miRNA:   3'- aCUAGCUUcACUAGUaGCUGcCGCUc -5'
18967 3' -50.5 NC_004683.1 + 49785 0.67 0.894217
Target:  5'- cGAUCGcuG-GGUCGUUGACGaCGAGc -3'
miRNA:   3'- aCUAGCuuCaCUAGUAGCUGCcGCUC- -5'
18967 3' -50.5 NC_004683.1 + 53707 0.68 0.886798
Target:  5'- aGGUCGcGGcgggccUGAUCGcgccgcagcUCGGCGGCGAa -3'
miRNA:   3'- aCUAGCuUC------ACUAGU---------AGCUGCCGCUc -5'
18967 3' -50.5 NC_004683.1 + 41139 0.68 0.886798
Target:  5'- gUGAUgCGAAagcugcUGAUCAgcUCGcCGGCGAGg -3'
miRNA:   3'- -ACUA-GCUUc-----ACUAGU--AGCuGCCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.