miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18970 3' -55.5 NC_004683.1 + 41181 0.8 0.129222
Target:  5'- -aGGCCCCGGCCguggcaGCGGCGCGGgGCCg -3'
miRNA:   3'- ugUUGGGGCUGGg-----CGUUGCGUUgUGG- -5'
18970 3' -55.5 NC_004683.1 + 15279 0.72 0.38181
Target:  5'- aACGuUCCCGGCCCauacacgguGUAACGCAGCGgCa -3'
miRNA:   3'- -UGUuGGGGCUGGG---------CGUUGCGUUGUgG- -5'
18970 3' -55.5 NC_004683.1 + 47421 0.72 0.399718
Target:  5'- cGCGGCCaCCGA-CCGCggUG-AACACCa -3'
miRNA:   3'- -UGUUGG-GGCUgGGCGuuGCgUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 23997 0.66 0.742908
Target:  5'- gACGAUgCCGucggccGCCaCGCcuACGCGGCGCUg -3'
miRNA:   3'- -UGUUGgGGC------UGG-GCGu-UGCGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 499 0.75 0.263241
Target:  5'- cCAGCCaCCGccugcgccaucaccGCCCGCAGCucuuucgacaGCGACGCCa -3'
miRNA:   3'- uGUUGG-GGC--------------UGGGCGUUG----------CGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 54172 0.75 0.26525
Target:  5'- cGCAuugcACCUCGACUCGCcgguGACGCuccACACCg -3'
miRNA:   3'- -UGU----UGGGGCUGGGCG----UUGCGu--UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 13466 0.74 0.307313
Target:  5'- gGCcACCCUGGCCCaugaaugGCAGCGUGcCGCCg -3'
miRNA:   3'- -UGuUGGGGCUGGG-------CGUUGCGUuGUGG- -5'
18970 3' -55.5 NC_004683.1 + 32050 0.73 0.315698
Target:  5'- uGguACCCCGauccugacgggGCCC-CGACGCAGCGCUa -3'
miRNA:   3'- -UguUGGGGC-----------UGGGcGUUGCGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 14263 0.73 0.323469
Target:  5'- uCAACCUCGGuggggcCCUGCAGCGCGucgacgaacgucACGCCa -3'
miRNA:   3'- uGUUGGGGCU------GGGCGUUGCGU------------UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 41535 0.72 0.38181
Target:  5'- gACGAucuCCCCGGCCuCGguGCGCGuauaGCCu -3'
miRNA:   3'- -UGUU---GGGGCUGG-GCguUGCGUug--UGG- -5'
18970 3' -55.5 NC_004683.1 + 25197 0.73 0.339437
Target:  5'- gGCGGCCagGACCgGCAACGC--CGCCg -3'
miRNA:   3'- -UGUUGGggCUGGgCGUUGCGuuGUGG- -5'
18970 3' -55.5 NC_004683.1 + 10574 0.73 0.315698
Target:  5'- cGCGAagCCGGCCCGCAGCaucGC-GCGCCu -3'
miRNA:   3'- -UGUUggGGCUGGGCGUUG---CGuUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 42659 0.77 0.184109
Target:  5'- cCGGCCCCGACcgCCGCGGCGCGcucgGCCu -3'
miRNA:   3'- uGUUGGGGCUG--GGCGUUGCGUug--UGG- -5'
18970 3' -55.5 NC_004683.1 + 46454 0.72 0.355968
Target:  5'- aGCGGCCCCacggGGCCCGCuccgGCAGCuuCCa -3'
miRNA:   3'- -UGUUGGGG----CUGGGCGuug-CGUUGu-GG- -5'
18970 3' -55.5 NC_004683.1 + 33437 0.76 0.227383
Target:  5'- gACGguACCCCaccgagaaagaGGCCCGCGACGCGcuCGCCc -3'
miRNA:   3'- -UGU--UGGGG-----------CUGGGCGUUGCGUu-GUGG- -5'
18970 3' -55.5 NC_004683.1 + 15052 0.73 0.315698
Target:  5'- aAC-ACCUCGACgCCGUuGCGCAuCACCu -3'
miRNA:   3'- -UGuUGGGGCUG-GGCGuUGCGUuGUGG- -5'
18970 3' -55.5 NC_004683.1 + 56683 0.72 0.364444
Target:  5'- --uACCCgCGGCCCGCggUGguGCugCc -3'
miRNA:   3'- uguUGGG-GCUGGGCGuuGCguUGugG- -5'
18970 3' -55.5 NC_004683.1 + 330 0.72 0.399718
Target:  5'- cCAGCCCCG-CCgcgggcaGCAGCGgCGGCAUCg -3'
miRNA:   3'- uGUUGGGGCuGGg------CGUUGC-GUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 46670 0.75 0.245712
Target:  5'- cGCGGCCCuCGACCgGCAccaGCaGCGGCAgCCa -3'
miRNA:   3'- -UGUUGGG-GCUGGgCGU---UG-CGUUGU-GG- -5'
18970 3' -55.5 NC_004683.1 + 39984 0.74 0.299839
Target:  5'- aACAGCUcguagaccgucguCCGgccaACCCGCAGCGCAucCGCCg -3'
miRNA:   3'- -UGUUGG-------------GGC----UGGGCGUUGCGUu-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.