Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18972 | 3' | -59.6 | NC_004683.1 | + | 24418 | 0.66 | 0.561672 |
Target: 5'- uCGUCGgcuaCGGCGG-GACCaagC-CGCCGg -3' miRNA: 3'- -GCAGCa---GCCGCCgCUGGca-GuGUGGC- -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 42602 | 0.66 | 0.531109 |
Target: 5'- gGUCGUcCGGCugggguggucGGCGACCGcgacgACGCCc -3' miRNA: 3'- gCAGCA-GCCG----------CCGCUGGCag---UGUGGc -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 9492 | 0.66 | 0.541235 |
Target: 5'- aGUCGguggcuugGGCGGCGGCCucccCGgGCCGa -3' miRNA: 3'- gCAGCag------CCGCCGCUGGca--GUgUGGC- -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 26797 | 0.66 | 0.57197 |
Target: 5'- gGUgGUCGGUGcGCGauGCCGccggCGCACuCGa -3' miRNA: 3'- gCAgCAGCCGC-CGC--UGGCa---GUGUG-GC- -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 25205 | 0.66 | 0.561672 |
Target: 5'- cCGgUGaCGGCGGCcagGACCGgcaACGCCGc -3' miRNA: 3'- -GCaGCaGCCGCCG---CUGGCag-UGUGGC- -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 51448 | 0.66 | 0.551425 |
Target: 5'- gGUCGUCgaGGaUGGCGGCCaUCuugaGCACCu -3' miRNA: 3'- gCAGCAG--CC-GCCGCUGGcAG----UGUGGc -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 4311 | 0.66 | 0.521053 |
Target: 5'- aGU-GUCGGCGuaGGCCGgccaCGuCACCGg -3' miRNA: 3'- gCAgCAGCCGCcgCUGGCa---GU-GUGGC- -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 8860 | 0.66 | 0.520051 |
Target: 5'- gGUCGUCGGUgucgaugcucGGCcgcgacgaggGGCCGUugcccucaccgaaCGCGCCGg -3' miRNA: 3'- gCAGCAGCCG----------CCG----------CUGGCA-------------GUGUGGC- -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 51255 | 0.66 | 0.541235 |
Target: 5'- gCGUUcUCGGCGGCGcGCCGgauccaguUC-CGCCa -3' miRNA: 3'- -GCAGcAGCCGCCGC-UGGC--------AGuGUGGc -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 50842 | 0.66 | 0.551425 |
Target: 5'- aGcCGUC-GCGa-GACCGUCGCGCCu -3' miRNA: 3'- gCaGCAGcCGCcgCUGGCAGUGUGGc -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 17301 | 0.66 | 0.531109 |
Target: 5'- aCGUUGUaCGGgGGCG-CCGgggucgGCACCa -3' miRNA: 3'- -GCAGCA-GCCgCCGCuGGCag----UGUGGc -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 52593 | 0.66 | 0.541235 |
Target: 5'- -cUCGUCGGCcGCGAUCGccugCACgugcuuGCCGa -3' miRNA: 3'- gcAGCAGCCGcCGCUGGCa---GUG------UGGC- -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 6461 | 0.66 | 0.521053 |
Target: 5'- uGUCGUCGaacaGGUcGCCGgggCGCACCa -3' miRNA: 3'- gCAGCAGCcg--CCGcUGGCa--GUGUGGc -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 9203 | 0.66 | 0.531109 |
Target: 5'- gGUCaGuUCGGCGGCGguGCC-UCGCuuuCCGa -3' miRNA: 3'- gCAG-C-AGCCGCCGC--UGGcAGUGu--GGC- -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 37963 | 0.66 | 0.541235 |
Target: 5'- cCGUC-UUGGCagggGGCGaACCGacucaccuUCACGCCGa -3' miRNA: 3'- -GCAGcAGCCG----CCGC-UGGC--------AGUGUGGC- -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 26333 | 0.67 | 0.48163 |
Target: 5'- gGUUGccUCGGCGaGCaGAUUGUCGCGCuCGa -3' miRNA: 3'- gCAGC--AGCCGC-CG-CUGGCAGUGUG-GC- -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 51662 | 0.67 | 0.501171 |
Target: 5'- -uUCGUUGGUGGCcaggucagaaACCG-CACGCCGc -3' miRNA: 3'- gcAGCAGCCGCCGc---------UGGCaGUGUGGC- -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 46795 | 0.67 | 0.511072 |
Target: 5'- aGUUGcgCGGCGGCGGguCCaa-GCACCGc -3' miRNA: 3'- gCAGCa-GCCGCCGCU--GGcagUGUGGC- -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 25233 | 0.67 | 0.515055 |
Target: 5'- uGUCGgugcgCGGCGuGCuGACCaacaucccgcagcugGUCGCACUGc -3' miRNA: 3'- gCAGCa----GCCGC-CG-CUGG---------------CAGUGUGGC- -5' |
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18972 | 3' | -59.6 | NC_004683.1 | + | 50029 | 0.67 | 0.491356 |
Target: 5'- uCGUCGUUGacGCGGCGugCGaCGCGuuCCu -3' miRNA: 3'- -GCAGCAGC--CGCCGCugGCaGUGU--GGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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