miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18972 3' -59.6 NC_004683.1 + 55710 1.08 0.000658
Target:  5'- gCGUCGUCGGCGGCGACCGUCACACCGu -3'
miRNA:   3'- -GCAGCAGCCGCCGCUGGCAGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 54690 0.76 0.12861
Target:  5'- gCGaUCGUcCGGuCGGCGA-CGUCGCGCCGa -3'
miRNA:   3'- -GC-AGCA-GCC-GCCGCUgGCAGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 44215 0.76 0.138854
Target:  5'- -cUCGUCGGCGGUGAacaCGUCccacagcggcucaGCGCCGg -3'
miRNA:   3'- gcAGCAGCCGCCGCUg--GCAG-------------UGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 19151 0.75 0.150628
Target:  5'- gCGcCGUCGGUGGCGucgugggugaGCCGUCAC-CCu -3'
miRNA:   3'- -GCaGCAGCCGCCGC----------UGGCAGUGuGGc -5'
18972 3' -59.6 NC_004683.1 + 15188 0.75 0.167158
Target:  5'- aGUUGUCGcccGCGGCGAUCuugCGCACCGa -3'
miRNA:   3'- gCAGCAGC---CGCCGCUGGca-GUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 25572 0.73 0.21575
Target:  5'- gGUCGgcaaCGGCacGGCGGCCGUCGCAg-- -3'
miRNA:   3'- gCAGCa---GCCG--CCGCUGGCAGUGUggc -5'
18972 3' -59.6 NC_004683.1 + 51215 0.72 0.23253
Target:  5'- cCGUCcaGUCGGCcuuGCGGCCcuUCGCGCCGg -3'
miRNA:   3'- -GCAG--CAGCCGc--CGCUGGc-AGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 6696 0.72 0.238362
Target:  5'- uGUUGUCGGCGaacUGGCCG-CGCACCu -3'
miRNA:   3'- gCAGCAGCCGCc--GCUGGCaGUGUGGc -5'
18972 3' -59.6 NC_004683.1 + 52218 0.71 0.269375
Target:  5'- cCGUCGUCGGUcggguccgccucGGCGACC--CGgGCCGg -3'
miRNA:   3'- -GCAGCAGCCG------------CCGCUGGcaGUgUGGC- -5'
18972 3' -59.6 NC_004683.1 + 5247 0.71 0.275955
Target:  5'- aCGUCGUCGcCGGCGuACCuG-CGCGCCu -3'
miRNA:   3'- -GCAGCAGCcGCCGC-UGG-CaGUGUGGc -5'
18972 3' -59.6 NC_004683.1 + 6973 0.71 0.275955
Target:  5'- -cUCGUCGGcCGGCGGCCcagacGUCGagACCGa -3'
miRNA:   3'- gcAGCAGCC-GCCGCUGG-----CAGUg-UGGC- -5'
18972 3' -59.6 NC_004683.1 + 41845 0.71 0.282663
Target:  5'- uCGgCGUCGGCGGCGGuaUCGaCGCGCgGg -3'
miRNA:   3'- -GCaGCAGCCGCCGCU--GGCaGUGUGgC- -5'
18972 3' -59.6 NC_004683.1 + 11455 0.71 0.282663
Target:  5'- gCG-CGUCGGCGGCGACaucgaCGUUGCgggaGCCa -3'
miRNA:   3'- -GCaGCAGCCGCCGCUG-----GCAGUG----UGGc -5'
18972 3' -59.6 NC_004683.1 + 38562 0.71 0.296465
Target:  5'- gCGUCGUCGG-GGCGAaCCGgccgCAuaagaaaccccCGCCGg -3'
miRNA:   3'- -GCAGCAGCCgCCGCU-GGCa---GU-----------GUGGC- -5'
18972 3' -59.6 NC_004683.1 + 32693 0.71 0.30356
Target:  5'- gGUCGUCuGGCaGUGGCagcUCGCGCCGg -3'
miRNA:   3'- gCAGCAG-CCGcCGCUGgc-AGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 48576 0.71 0.306435
Target:  5'- -aUCGUCGGCGGCGAgagcggaccuggugcCCGgccgaugCACcCCGa -3'
miRNA:   3'- gcAGCAGCCGCCGCU---------------GGCa------GUGuGGC- -5'
18972 3' -59.6 NC_004683.1 + 26705 0.7 0.31814
Target:  5'- aCGUCGagugcgcCGGCGGC-AUCG-CGCACCGa -3'
miRNA:   3'- -GCAGCa------GCCGCCGcUGGCaGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 10708 0.7 0.325625
Target:  5'- gCGguaggCGUCGGUGGCaucgcgGACCGccCGCACCu -3'
miRNA:   3'- -GCa----GCAGCCGCCG------CUGGCa-GUGUGGc -5'
18972 3' -59.6 NC_004683.1 + 18193 0.7 0.33324
Target:  5'- --gUGcCGGCGGCGACCGcgaUCGUGCCGa -3'
miRNA:   3'- gcaGCaGCCGCCGCUGGC---AGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 6735 0.7 0.348066
Target:  5'- aGUCGaCGGCccgGGCGGCCGcgugcugUCGCuGCCGa -3'
miRNA:   3'- gCAGCaGCCG---CCGCUGGC-------AGUG-UGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.