miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18972 3' -59.6 NC_004683.1 + 50842 0.66 0.551425
Target:  5'- aGcCGUC-GCGa-GACCGUCGCGCCu -3'
miRNA:   3'- gCaGCAGcCGCcgCUGGCAGUGUGGc -5'
18972 3' -59.6 NC_004683.1 + 53123 0.68 0.416401
Target:  5'- uCGUCGUUGGaGGUGACCaugucgacguUCGCGCCc -3'
miRNA:   3'- -GCAGCAGCCgCCGCUGGc---------AGUGUGGc -5'
18972 3' -59.6 NC_004683.1 + 13364 0.68 0.453036
Target:  5'- aGUCucCGGUGGCGGCgG-CACGCUGc -3'
miRNA:   3'- gCAGcaGCCGCCGCUGgCaGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 30520 0.68 0.453036
Target:  5'- uGUCGcugaGGCugauGGCGGCCGUUACguucggguGCCGg -3'
miRNA:   3'- gCAGCag--CCG----CCGCUGGCAGUG--------UGGC- -5'
18972 3' -59.6 NC_004683.1 + 33942 0.68 0.453036
Target:  5'- cCG-CGUCGGCuGGauCGGCCG--GCACCGg -3'
miRNA:   3'- -GCaGCAGCCG-CC--GCUGGCagUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 51662 0.67 0.501171
Target:  5'- -uUCGUUGGUGGCcaggucagaaACCG-CACGCCGc -3'
miRNA:   3'- gcAGCAGCCGCCGc---------UGGCaGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 46795 0.67 0.511072
Target:  5'- aGUUGcgCGGCGGCGGguCCaa-GCACCGc -3'
miRNA:   3'- gCAGCa-GCCGCCGCU--GGcagUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 25233 0.67 0.515055
Target:  5'- uGUCGgugcgCGGCGuGCuGACCaacaucccgcagcugGUCGCACUGc -3'
miRNA:   3'- gCAGCa----GCCGC-CG-CUGG---------------CAGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 42602 0.66 0.531109
Target:  5'- gGUCGUcCGGCugggguggucGGCGACCGcgacgACGCCc -3'
miRNA:   3'- gCAGCA-GCCG----------CCGCUGGCag---UGUGGc -5'
18972 3' -59.6 NC_004683.1 + 31442 0.69 0.364993
Target:  5'- -----aCGGCGGCGGCgGUCAC-CCa -3'
miRNA:   3'- gcagcaGCCGCCGCUGgCAGUGuGGc -5'
18972 3' -59.6 NC_004683.1 + 3597 0.69 0.356862
Target:  5'- cCG-CGUCGGCGuCGAgCGaUACACCGa -3'
miRNA:   3'- -GCaGCAGCCGCcGCUgGCaGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 6735 0.7 0.348066
Target:  5'- aGUCGaCGGCccgGGCGGCCGcgugcugUCGCuGCCGa -3'
miRNA:   3'- gCAGCaGCCG---CCGCUGGC-------AGUG-UGGC- -5'
18972 3' -59.6 NC_004683.1 + 25572 0.73 0.21575
Target:  5'- gGUCGgcaaCGGCacGGCGGCCGUCGCAg-- -3'
miRNA:   3'- gCAGCa---GCCG--CCGCUGGCAGUGUggc -5'
18972 3' -59.6 NC_004683.1 + 52218 0.71 0.269375
Target:  5'- cCGUCGUCGGUcggguccgccucGGCGACC--CGgGCCGg -3'
miRNA:   3'- -GCAGCAGCCG------------CCGCUGGcaGUgUGGC- -5'
18972 3' -59.6 NC_004683.1 + 6973 0.71 0.275955
Target:  5'- -cUCGUCGGcCGGCGGCCcagacGUCGagACCGa -3'
miRNA:   3'- gcAGCAGCC-GCCGCUGG-----CAGUg-UGGC- -5'
18972 3' -59.6 NC_004683.1 + 5247 0.71 0.275955
Target:  5'- aCGUCGUCGcCGGCGuACCuG-CGCGCCu -3'
miRNA:   3'- -GCAGCAGCcGCCGC-UGG-CaGUGUGGc -5'
18972 3' -59.6 NC_004683.1 + 38562 0.71 0.296465
Target:  5'- gCGUCGUCGG-GGCGAaCCGgccgCAuaagaaaccccCGCCGg -3'
miRNA:   3'- -GCAGCAGCCgCCGCU-GGCa---GU-----------GUGGC- -5'
18972 3' -59.6 NC_004683.1 + 32693 0.71 0.30356
Target:  5'- gGUCGUCuGGCaGUGGCagcUCGCGCCGg -3'
miRNA:   3'- gCAGCAG-CCGcCGCUGgc-AGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 48576 0.71 0.306435
Target:  5'- -aUCGUCGGCGGCGAgagcggaccuggugcCCGgccgaugCACcCCGa -3'
miRNA:   3'- gcAGCAGCCGCCGCU---------------GGCa------GUGuGGC- -5'
18972 3' -59.6 NC_004683.1 + 26705 0.7 0.31814
Target:  5'- aCGUCGagugcgcCGGCGGC-AUCG-CGCACCGa -3'
miRNA:   3'- -GCAGCa------GCCGCCGcUGGCaGUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.