miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18972 3' -59.6 NC_004683.1 + 3597 0.69 0.356862
Target:  5'- cCG-CGUCGGCGuCGAgCGaUACACCGa -3'
miRNA:   3'- -GCaGCAGCCGCcGCUgGCaGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 4311 0.66 0.521053
Target:  5'- aGU-GUCGGCGuaGGCCGgccaCGuCACCGg -3'
miRNA:   3'- gCAgCAGCCGCcgCUGGCa---GU-GUGGC- -5'
18972 3' -59.6 NC_004683.1 + 5247 0.71 0.275955
Target:  5'- aCGUCGUCGcCGGCGuACCuG-CGCGCCu -3'
miRNA:   3'- -GCAGCAGCcGCCGC-UGG-CaGUGUGGc -5'
18972 3' -59.6 NC_004683.1 + 6461 0.66 0.521053
Target:  5'- uGUCGUCGaacaGGUcGCCGgggCGCACCa -3'
miRNA:   3'- gCAGCAGCcg--CCGcUGGCa--GUGUGGc -5'
18972 3' -59.6 NC_004683.1 + 6696 0.72 0.238362
Target:  5'- uGUUGUCGGCGaacUGGCCG-CGCACCu -3'
miRNA:   3'- gCAGCAGCCGCc--GCUGGCaGUGUGGc -5'
18972 3' -59.6 NC_004683.1 + 6735 0.7 0.348066
Target:  5'- aGUCGaCGGCccgGGCGGCCGcgugcugUCGCuGCCGa -3'
miRNA:   3'- gCAGCaGCCG---CCGCUGGC-------AGUG-UGGC- -5'
18972 3' -59.6 NC_004683.1 + 6973 0.71 0.275955
Target:  5'- -cUCGUCGGcCGGCGGCCcagacGUCGagACCGa -3'
miRNA:   3'- gcAGCAGCC-GCCGCUGG-----CAGUg-UGGC- -5'
18972 3' -59.6 NC_004683.1 + 8860 0.66 0.520051
Target:  5'- gGUCGUCGGUgucgaugcucGGCcgcgacgaggGGCCGUugcccucaccgaaCGCGCCGg -3'
miRNA:   3'- gCAGCAGCCG----------CCG----------CUGGCA-------------GUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 9203 0.66 0.531109
Target:  5'- gGUCaGuUCGGCGGCGguGCC-UCGCuuuCCGa -3'
miRNA:   3'- gCAG-C-AGCCGCCGC--UGGcAGUGu--GGC- -5'
18972 3' -59.6 NC_004683.1 + 9492 0.66 0.541235
Target:  5'- aGUCGguggcuugGGCGGCGGCCucccCGgGCCGa -3'
miRNA:   3'- gCAGCag------CCGCCGCUGGca--GUgUGGC- -5'
18972 3' -59.6 NC_004683.1 + 10708 0.7 0.325625
Target:  5'- gCGguaggCGUCGGUGGCaucgcgGACCGccCGCACCu -3'
miRNA:   3'- -GCa----GCAGCCGCCG------CUGGCa-GUGUGGc -5'
18972 3' -59.6 NC_004683.1 + 11455 0.71 0.282663
Target:  5'- gCG-CGUCGGCGGCGACaucgaCGUUGCgggaGCCa -3'
miRNA:   3'- -GCaGCAGCCGCCGCUG-----GCAGUG----UGGc -5'
18972 3' -59.6 NC_004683.1 + 13364 0.68 0.453036
Target:  5'- aGUCucCGGUGGCGGCgG-CACGCUGc -3'
miRNA:   3'- gCAGcaGCCGCCGCUGgCaGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 13821 0.69 0.372419
Target:  5'- uGUUGccCGGCGGUguuuggcagcgcaGGCCG-CGCACCGg -3'
miRNA:   3'- gCAGCa-GCCGCCG-------------CUGGCaGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 15188 0.75 0.167158
Target:  5'- aGUUGUCGcccGCGGCGAUCuugCGCACCGa -3'
miRNA:   3'- gCAGCAGC---CGCCGCUGGca-GUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 16211 0.69 0.389287
Target:  5'- aGUCGUgGGUgucgauguaguacGGCaGCCG-CACGCCGg -3'
miRNA:   3'- gCAGCAgCCG-------------CCGcUGGCaGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 17301 0.66 0.531109
Target:  5'- aCGUUGUaCGGgGGCG-CCGgggucgGCACCa -3'
miRNA:   3'- -GCAGCA-GCCgCCGCuGGCag----UGUGGc -5'
18972 3' -59.6 NC_004683.1 + 18193 0.7 0.33324
Target:  5'- --gUGcCGGCGGCGACCGcgaUCGUGCCGa -3'
miRNA:   3'- gcaGCaGCCGCCGCUGGC---AGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 19151 0.75 0.150628
Target:  5'- gCGcCGUCGGUGGCGucgugggugaGCCGUCAC-CCu -3'
miRNA:   3'- -GCaGCAGCCGCCGC----------UGGCAGUGuGGc -5'
18972 3' -59.6 NC_004683.1 + 21250 0.68 0.453036
Target:  5'- gCGUCGUCGGUGcCGAcaCCGUggucCGCgGCCGg -3'
miRNA:   3'- -GCAGCAGCCGCcGCU--GGCA----GUG-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.