miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18972 5' -58.7 NC_004683.1 + 6490 0.66 0.523133
Target:  5'- -gUGCGCGCGACccuUGaCCGCGGugUc -3'
miRNA:   3'- aaGCGCGUGCUGu--ACcGGCGUCugGu -5'
18972 5' -58.7 NC_004683.1 + 32712 0.66 0.523133
Target:  5'- cUCGCGC-CGGC-UGGCCcGC-GACUu -3'
miRNA:   3'- aAGCGCGuGCUGuACCGG-CGuCUGGu -5'
18972 5' -58.7 NC_004683.1 + 15850 0.66 0.523133
Target:  5'- -cUGCuGCACGGCAacaucggccaGGCCGCugAGGCCGc -3'
miRNA:   3'- aaGCG-CGUGCUGUa---------CCGGCG--UCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 37474 0.66 0.520001
Target:  5'- cUUGCGCuCGAUuguggacgcgguacgGGCCGCAGcCCGc -3'
miRNA:   3'- aAGCGCGuGCUGua-------------CCGGCGUCuGGU- -5'
18972 5' -58.7 NC_004683.1 + 13492 0.66 0.512721
Target:  5'- gUUGaGCGCGaACggGGCCGCcugcGGGCCAc -3'
miRNA:   3'- aAGCgCGUGC-UGuaCCGGCG----UCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 19309 0.66 0.512721
Target:  5'- -cCGCGUuCGACccGGCgGCGGccACCAg -3'
miRNA:   3'- aaGCGCGuGCUGuaCCGgCGUC--UGGU- -5'
18972 5' -58.7 NC_004683.1 + 21079 0.66 0.512721
Target:  5'- gUCGCuGCGgGACGgucGGCgaCGguGACCAg -3'
miRNA:   3'- aAGCG-CGUgCUGUa--CCG--GCguCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 47422 0.66 0.512721
Target:  5'- gUCGCgGCGCGGCAgcgcaaGGCCG-GGACgAa -3'
miRNA:   3'- aAGCG-CGUGCUGUa-----CCGGCgUCUGgU- -5'
18972 5' -58.7 NC_004683.1 + 2188 0.66 0.502396
Target:  5'- --gGUGCACuAC-UGGCCGC-GACCGc -3'
miRNA:   3'- aagCGCGUGcUGuACCGGCGuCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 24032 0.66 0.502396
Target:  5'- -cCGUGCuCGACGagcuUGGCCagGguGACCGg -3'
miRNA:   3'- aaGCGCGuGCUGU----ACCGG--CguCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 53127 0.66 0.501368
Target:  5'- aUCGCGUGCGACAUuGCgagauuagcacagCGCAGAgCCu -3'
miRNA:   3'- aAGCGCGUGCUGUAcCG-------------GCGUCU-GGu -5'
18972 5' -58.7 NC_004683.1 + 25860 0.66 0.496245
Target:  5'- gUUCGCG-ACGGC-UGGCUGCGGcucggcgucgaguucGCCGg -3'
miRNA:   3'- -AAGCGCgUGCUGuACCGGCGUC---------------UGGU- -5'
18972 5' -58.7 NC_004683.1 + 12154 0.66 0.492162
Target:  5'- -cCGCGCucagguggGCGGCAgggggUGGCgGgGGGCCAg -3'
miRNA:   3'- aaGCGCG--------UGCUGU-----ACCGgCgUCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 53573 0.66 0.492162
Target:  5'- -aCGC-CGCGGCAgacgccGGCCGCAccgccGGCCGc -3'
miRNA:   3'- aaGCGcGUGCUGUa-----CCGGCGU-----CUGGU- -5'
18972 5' -58.7 NC_004683.1 + 18124 0.66 0.489111
Target:  5'- gUCGCcgccggcaccuaccGCACGcCGUGGCgGcCGGACCc -3'
miRNA:   3'- aAGCG--------------CGUGCuGUACCGgC-GUCUGGu -5'
18972 5' -58.7 NC_004683.1 + 16008 0.66 0.482026
Target:  5'- -cCGCGCaACGACAaGGgCGCGGcaacguuccgcACCAa -3'
miRNA:   3'- aaGCGCG-UGCUGUaCCgGCGUC-----------UGGU- -5'
18972 5' -58.7 NC_004683.1 + 48822 0.66 0.471992
Target:  5'- gUUCGCGU-CGGCAagaaacgcgcUGGCCGCGaacucgacGGCCGc -3'
miRNA:   3'- -AAGCGCGuGCUGU----------ACCGGCGU--------CUGGU- -5'
18972 5' -58.7 NC_004683.1 + 48276 0.67 0.462064
Target:  5'- -cUGCGCAgCGAaucacCAUGGCCGCu-GCCGa -3'
miRNA:   3'- aaGCGCGU-GCU-----GUACCGGCGucUGGU- -5'
18972 5' -58.7 NC_004683.1 + 6829 0.67 0.462064
Target:  5'- gUCG-GCAgCGACAgcacgcGGCCGCccGGGCCGu -3'
miRNA:   3'- aAGCgCGU-GCUGUa-----CCGGCG--UCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 5835 0.67 0.452248
Target:  5'- cUCGcCGCGCGGCAccGCCGCcaAGGCg- -3'
miRNA:   3'- aAGC-GCGUGCUGUacCGGCG--UCUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.