miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18973 5' -56.3 NC_004683.1 + 20430 0.66 0.64827
Target:  5'- -cGGCACCgGCGgugcaggggccACCGCGCCGaUGGc- -3'
miRNA:   3'- gaCCGUGG-CGU-----------UGGUGCGGUcACUua -5'
18973 5' -56.3 NC_004683.1 + 43963 0.66 0.64827
Target:  5'- uCUGGCAgcacCCGCGcGCCucccggaucgACGCgCAGUGggUc -3'
miRNA:   3'- -GACCGU----GGCGU-UGG----------UGCG-GUCACuuA- -5'
18973 5' -56.3 NC_004683.1 + 13447 0.66 0.626105
Target:  5'- gUGGCAgCGCGuuccCCGCGCagGGUGGc- -3'
miRNA:   3'- gACCGUgGCGUu---GGUGCGg-UCACUua -5'
18973 5' -56.3 NC_004683.1 + 46920 0.66 0.626105
Target:  5'- -aGGCGCUGCcgacGugCACGaCGGUGGAg -3'
miRNA:   3'- gaCCGUGGCG----UugGUGCgGUCACUUa -5'
18973 5' -56.3 NC_004683.1 + 25595 0.66 0.626105
Target:  5'- -cGGCACgGCGucagcuucaACCACGCCGuaGAAg -3'
miRNA:   3'- gaCCGUGgCGU---------UGGUGCGGUcaCUUa -5'
18973 5' -56.3 NC_004683.1 + 40931 0.66 0.615026
Target:  5'- -gGGCGCCGagcuGACCGCGCCGc----- -3'
miRNA:   3'- gaCCGUGGCg---UUGGUGCGGUcacuua -5'
18973 5' -56.3 NC_004683.1 + 47110 0.66 0.603962
Target:  5'- gCUGGaGCCGCGAgagaucgcCCGCGCCA-UGGAc -3'
miRNA:   3'- -GACCgUGGCGUU--------GGUGCGGUcACUUa -5'
18973 5' -56.3 NC_004683.1 + 42622 0.66 0.592922
Target:  5'- -cGGCgACCGCGACgACGCCcGcGAc- -3'
miRNA:   3'- gaCCG-UGGCGUUGgUGCGGuCaCUua -5'
18973 5' -56.3 NC_004683.1 + 1134 0.66 0.592922
Target:  5'- -aGGCACCGCAGacaGCGUgGGcaUGAGUg -3'
miRNA:   3'- gaCCGUGGCGUUgg-UGCGgUC--ACUUA- -5'
18973 5' -56.3 NC_004683.1 + 5844 0.66 0.592922
Target:  5'- -cGGCACCGCcgccaaggcGCCugGCUGGcGAAc -3'
miRNA:   3'- gaCCGUGGCGu--------UGGugCGGUCaCUUa -5'
18973 5' -56.3 NC_004683.1 + 28799 0.67 0.581916
Target:  5'- gUGaGUGCCGCAGCCAUGCUcGUcGAc- -3'
miRNA:   3'- gAC-CGUGGCGUUGGUGCGGuCA-CUua -5'
18973 5' -56.3 NC_004683.1 + 18002 0.67 0.581916
Target:  5'- aUGGUGCCGU--CCugGCCgGGUGGGc -3'
miRNA:   3'- gACCGUGGCGuuGGugCGG-UCACUUa -5'
18973 5' -56.3 NC_004683.1 + 13805 0.67 0.581916
Target:  5'- uUGGCAgCGCAgGCCGCGCacCGGcGAAa -3'
miRNA:   3'- gACCGUgGCGU-UGGUGCG--GUCaCUUa -5'
18973 5' -56.3 NC_004683.1 + 38733 0.67 0.581916
Target:  5'- cCUGGCGauauccaCGCGACCACGaacaUGGUGGc- -3'
miRNA:   3'- -GACCGUg------GCGUUGGUGCg---GUCACUua -5'
18973 5' -56.3 NC_004683.1 + 4742 0.67 0.581916
Target:  5'- -aGGC-CCGCAACCGgGCCGacGAGg -3'
miRNA:   3'- gaCCGuGGCGUUGGUgCGGUcaCUUa -5'
18973 5' -56.3 NC_004683.1 + 21424 0.67 0.570953
Target:  5'- aUGGuCACCGaCAGCgGCGCCGGc---- -3'
miRNA:   3'- gACC-GUGGC-GUUGgUGCGGUCacuua -5'
18973 5' -56.3 NC_004683.1 + 16613 0.67 0.570953
Target:  5'- gUGGCGgccgggggauCCGCAGCCAgaCCGGUGGGc -3'
miRNA:   3'- gACCGU----------GGCGUUGGUgcGGUCACUUa -5'
18973 5' -56.3 NC_004683.1 + 28800 0.67 0.56004
Target:  5'- aUGGCggaucgAUCGUGACCGCGUCAG-GggUg -3'
miRNA:   3'- gACCG------UGGCGUUGGUGCGGUCaCuuA- -5'
18973 5' -56.3 NC_004683.1 + 24726 0.67 0.56004
Target:  5'- -aGGCGCgcgaacucgGCGGCCuggGCGCCGGUGAc- -3'
miRNA:   3'- gaCCGUGg--------CGUUGG---UGCGGUCACUua -5'
18973 5' -56.3 NC_004683.1 + 40200 0.67 0.549185
Target:  5'- uUGGCGauggUCGCGGCCGCGuCCGGcUGGu- -3'
miRNA:   3'- gACCGU----GGCGUUGGUGC-GGUC-ACUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.