Results 1 - 20 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 12707 | 0.75 | 0.190704 |
Target: 5'- -cGGCGCCGCGGCCAgGCUGGcGAc- -3' miRNA: 3'- gaCCGUGGCGUUGGUgCGGUCaCUua -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 40200 | 0.67 | 0.549185 |
Target: 5'- uUGGCGauggUCGCGGCCGCGuCCGGcUGGu- -3' miRNA: 3'- gACCGU----GGCGUUGGUGC-GGUC-ACUua -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 28799 | 0.67 | 0.581916 |
Target: 5'- gUGaGUGCCGCAGCCAUGCUcGUcGAc- -3' miRNA: 3'- gAC-CGUGGCGUUGGUGCGGuCA-CUua -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 25595 | 0.66 | 0.626105 |
Target: 5'- -cGGCACgGCGucagcuucaACCACGCCGuaGAAg -3' miRNA: 3'- gaCCGUGgCGU---------UGGUGCGGUcaCUUa -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 12167 | 0.7 | 0.397694 |
Target: 5'- -cGGCauGCCGgGGCCGCGCUcaGGUGGGc -3' miRNA: 3'- gaCCG--UGGCgUUGGUGCGG--UCACUUa -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 43986 | 0.7 | 0.406964 |
Target: 5'- gCUGGCACU-CGACCACGCCgcgccgGGUGu-- -3' miRNA: 3'- -GACCGUGGcGUUGGUGCGG------UCACuua -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 26633 | 0.69 | 0.445356 |
Target: 5'- -gGGCGgCGCAACCAgccagggugauCGCCAG-GAAc -3' miRNA: 3'- gaCCGUgGCGUUGGU-----------GCGGUCaCUUa -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 49624 | 0.69 | 0.445356 |
Target: 5'- aUGGCAUCGCAuCCGcCGCCGcUGAc- -3' miRNA: 3'- gACCGUGGCGUuGGU-GCGGUcACUua -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 23808 | 0.68 | 0.496047 |
Target: 5'- -cGGCGCCGgGgugguGCCGcCGCCGGUGc-- -3' miRNA: 3'- gaCCGUGGCgU-----UGGU-GCGGUCACuua -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 56158 | 0.67 | 0.549185 |
Target: 5'- gUGGUugCGguGCCAgCGCCAGa---- -3' miRNA: 3'- gACCGugGCguUGGU-GCGGUCacuua -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 53801 | 0.68 | 0.517049 |
Target: 5'- -cGGCgugcacuuACCGCAGCCGCaCCAuGUGGGg -3' miRNA: 3'- gaCCG--------UGGCGUUGGUGcGGU-CACUUa -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 21157 | 0.68 | 0.485691 |
Target: 5'- -cGGUACCGCGgaaACCAUGCCguccGGUGc-- -3' miRNA: 3'- gaCCGUGGCGU---UGGUGCGG----UCACuua -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 22057 | 0.72 | 0.312773 |
Target: 5'- -cGcGCGCCaGCAccacccGCCugGCCGGUGAAc -3' miRNA: 3'- gaC-CGUGG-CGU------UGGugCGGUCACUUa -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 23171 | 0.68 | 0.517049 |
Target: 5'- gCUGGCgaaCGCccacgaGAgCGCGCCGGUGAGc -3' miRNA: 3'- -GACCGug-GCG------UUgGUGCGGUCACUUa -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 21449 | 0.71 | 0.353435 |
Target: 5'- --aGCGCCGCAugCccaguCGCCGGUGAc- -3' miRNA: 3'- gacCGUGGCGUugGu----GCGGUCACUua -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 41955 | 0.69 | 0.455267 |
Target: 5'- -gGGCGCCccuCGGCC-UGCCAGUGAc- -3' miRNA: 3'- gaCCGUGGc--GUUGGuGCGGUCACUua -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 55784 | 0.67 | 0.538397 |
Target: 5'- -cGGuCGCCGcCGACgACGCCAGcguUGAGc -3' miRNA: 3'- gaCC-GUGGC-GUUGgUGCGGUC---ACUUa -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 24726 | 0.67 | 0.56004 |
Target: 5'- -aGGCGCgcgaacucgGCGGCCuggGCGCCGGUGAc- -3' miRNA: 3'- gaCCGUGg--------CGUUGG---UGCGGUCACUua -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 46657 | 0.7 | 0.388562 |
Target: 5'- -cGGCACCaGCAGCgGCaGCCAGUa--- -3' miRNA: 3'- gaCCGUGG-CGUUGgUG-CGGUCAcuua -5' |
|||||||
18973 | 5' | -56.3 | NC_004683.1 | + | 22023 | 0.69 | 0.435566 |
Target: 5'- -cGGCgGCCGCAccGCCAcCGCCGGgcgGAu- -3' miRNA: 3'- gaCCG-UGGCGU--UGGU-GCGGUCa--CUua -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home