miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18974 3' -58.1 NC_004683.1 + 51629 0.66 0.557786
Target:  5'- uGCGUGCgcugGCGGCGCGCcuGcCguGCGUGa -3'
miRNA:   3'- -UGCGCGa---UGUCGCGCGucCuG--UGCAU- -5'
18974 3' -58.1 NC_004683.1 + 53679 0.66 0.557786
Target:  5'- gGCGCGaCU-CcGCGaCGCuGGGCAUGUGu -3'
miRNA:   3'- -UGCGC-GAuGuCGC-GCGuCCUGUGCAU- -5'
18974 3' -58.1 NC_004683.1 + 12471 0.66 0.557786
Target:  5'- gAUGCgGCUGuccgaGGCGCaGCAGGGCACc-- -3'
miRNA:   3'- -UGCG-CGAUg----UCGCG-CGUCCUGUGcau -5'
18974 3' -58.1 NC_004683.1 + 43969 0.66 0.557786
Target:  5'- cCGCGCcgGguGuCGCgGUAGGGCACGa- -3'
miRNA:   3'- uGCGCGa-UguC-GCG-CGUCCUGUGCau -5'
18974 3' -58.1 NC_004683.1 + 250 0.66 0.547106
Target:  5'- cCGCuGCUGCccGCG-GCGGGGCugGUc -3'
miRNA:   3'- uGCG-CGAUGu-CGCgCGUCCUGugCAu -5'
18974 3' -58.1 NC_004683.1 + 6877 0.66 0.547106
Target:  5'- gGC-CGCUggACGGCGCGCGacGGCGCGa- -3'
miRNA:   3'- -UGcGCGA--UGUCGCGCGUc-CUGUGCau -5'
18974 3' -58.1 NC_004683.1 + 49084 0.66 0.547106
Target:  5'- uCGgGCUugAGgGCgGCGGGAuCGCGg- -3'
miRNA:   3'- uGCgCGAugUCgCG-CGUCCU-GUGCau -5'
18974 3' -58.1 NC_004683.1 + 25284 0.66 0.547106
Target:  5'- cCGCGCUGCcgGGCcUGCAGGcGCACa-- -3'
miRNA:   3'- uGCGCGAUG--UCGcGCGUCC-UGUGcau -5'
18974 3' -58.1 NC_004683.1 + 23384 0.66 0.540728
Target:  5'- cCGCGCUGCAGCgggaugacgaugcucGUGCcgGGGAC-CGg- -3'
miRNA:   3'- uGCGCGAUGUCG---------------CGCG--UCCUGuGCau -5'
18974 3' -58.1 NC_004683.1 + 33273 0.66 0.535433
Target:  5'- cACGCuucGCggACGGUGCGCuGGgugggauGCACGUAg -3'
miRNA:   3'- -UGCG---CGa-UGUCGCGCGuCC-------UGUGCAU- -5'
18974 3' -58.1 NC_004683.1 + 8152 0.66 0.525948
Target:  5'- uACGCGCU-CGGCGCcgAGGcCGCGa- -3'
miRNA:   3'- -UGCGCGAuGUCGCGcgUCCuGUGCau -5'
18974 3' -58.1 NC_004683.1 + 42579 0.66 0.525948
Target:  5'- aGCGCGCcGCGGCG-GuCGGGGC-CGg- -3'
miRNA:   3'- -UGCGCGaUGUCGCgC-GUCCUGuGCau -5'
18974 3' -58.1 NC_004683.1 + 56329 0.66 0.515485
Target:  5'- uGCGCGCUGUAGCGCGUucucgaugucGGGuugccaGCGUc -3'
miRNA:   3'- -UGCGCGAUGUCGCGCG----------UCCug----UGCAu -5'
18974 3' -58.1 NC_004683.1 + 20413 0.67 0.49482
Target:  5'- uAUGUGgUGCuguuCGCGCGGGACAUGa- -3'
miRNA:   3'- -UGCGCgAUGuc--GCGCGUCCUGUGCau -5'
18974 3' -58.1 NC_004683.1 + 37717 0.67 0.484629
Target:  5'- cGCGCGCUGCcccuuccacuCGCGCAGGGggucacccuCugGUGa -3'
miRNA:   3'- -UGCGCGAUGuc--------GCGCGUCCU---------GugCAU- -5'
18974 3' -58.1 NC_004683.1 + 3179 0.67 0.454684
Target:  5'- aACGUGC-GCGGCgGCGguGaGACACGc- -3'
miRNA:   3'- -UGCGCGaUGUCG-CGCguC-CUGUGCau -5'
18974 3' -58.1 NC_004683.1 + 56401 0.67 0.454684
Target:  5'- cCGCaugGCaACAGCGCGCAGGGguUGa- -3'
miRNA:   3'- uGCG---CGaUGUCGCGCGUCCUguGCau -5'
18974 3' -58.1 NC_004683.1 + 52572 0.68 0.435287
Target:  5'- cACGUGCUugccgagcCAGCGCGCGaGACccuGCGUGg -3'
miRNA:   3'- -UGCGCGAu-------GUCGCGCGUcCUG---UGCAU- -5'
18974 3' -58.1 NC_004683.1 + 26124 0.68 0.435287
Target:  5'- cGCGCGCcggaacggUGCauGGUGUGCAGGAUcuGCGUc -3'
miRNA:   3'- -UGCGCG--------AUG--UCGCGCGUCCUG--UGCAu -5'
18974 3' -58.1 NC_004683.1 + 5389 0.68 0.432418
Target:  5'- gGCGCGCuucuccUcuucggugaggaucGCGGCGUGCGGGuuGCGUGc -3'
miRNA:   3'- -UGCGCG------A--------------UGUCGCGCGUCCugUGCAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.