Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18974 | 5' | -59.2 | NC_004683.1 | + | 52139 | 0.66 | 0.473173 |
Target: 5'- uUC-CUGUGCCUgaCGCACAU--CACGCa -3' miRNA: 3'- uAGuGACGCGGG--GCGUGUGacGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 43785 | 0.66 | 0.45057 |
Target: 5'- -gCGCgaUGCGgucgggguccauacCCuuGgGCACUGCACGCg -3' miRNA: 3'- uaGUG--ACGC--------------GGggCgUGUGACGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 40192 | 0.66 | 0.453485 |
Target: 5'- gGUCGCggccGCGUCCgGCugGuCUGUcaagGCGCg -3' miRNA: 3'- -UAGUGa---CGCGGGgCGugU-GACG----UGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 50386 | 0.66 | 0.483177 |
Target: 5'- gGUCGCUcaugaaGCGuCCCCGaACAgaGUugGCg -3' miRNA: 3'- -UAGUGA------CGC-GGGGCgUGUgaCGugCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 17978 | 0.66 | 0.487206 |
Target: 5'- -cCACUGCGCUgUGUggcguugagcugaacGCGCUGCgGCGUc -3' miRNA: 3'- uaGUGACGCGGgGCG---------------UGUGACG-UGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 46305 | 0.66 | 0.493281 |
Target: 5'- cGUgACUGCGgcgcCCCCGgACcgaacgcCUGCGCGUg -3' miRNA: 3'- -UAgUGACGC----GGGGCgUGu------GACGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 40942 | 0.66 | 0.493281 |
Target: 5'- aGUCGCUGCccguacucGCCCgcgaUGCACACUcgGCACu- -3' miRNA: 3'- -UAGUGACG--------CGGG----GCGUGUGA--CGUGcg -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 35477 | 0.66 | 0.502457 |
Target: 5'- -aCGCcgaaUGCG-CUCGCACGCUGUcugcgaaGCGCa -3' miRNA: 3'- uaGUG----ACGCgGGGCGUGUGACG-------UGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 43779 | 0.66 | 0.453485 |
Target: 5'- cAUCGCUaaGCaGUCCCuCgACgACUGCACGCa -3' miRNA: 3'- -UAGUGA--CG-CGGGGcG-UG-UGACGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 5116 | 0.66 | 0.470192 |
Target: 5'- --aGCUGCGUgCCCGgGCGCUGUcggccaucgagaagAUGCa -3' miRNA: 3'- uagUGACGCG-GGGCgUGUGACG--------------UGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 43566 | 0.66 | 0.493281 |
Target: 5'- gGUCGCgGCaGCCCC-CACGaggGCAgGCu -3' miRNA: 3'- -UAGUGaCG-CGGGGcGUGUga-CGUgCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 25240 | 0.66 | 0.493281 |
Target: 5'- -gCGCgGCGUgcugaccaacauCCCGCagcuggucGCACUGCugGCc -3' miRNA: 3'- uaGUGaCGCG------------GGGCG--------UGUGACGugCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 8560 | 0.66 | 0.493281 |
Target: 5'- gAUCGCcgugGCGUUCCGCgacGCACUcgGUACGUc -3' miRNA: 3'- -UAGUGa---CGCGGGGCG---UGUGA--CGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 18117 | 0.66 | 0.503482 |
Target: 5'- gAUCGCgGuCGCCgCCgGCACcuACcGCACGCc -3' miRNA: 3'- -UAGUGaC-GCGG-GG-CGUG--UGaCGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 52231 | 0.66 | 0.459345 |
Target: 5'- uGUCACgcagcugcgugaugUGCGUCagGCACaggaacaGCUGCGCGCg -3' miRNA: 3'- -UAGUG--------------ACGCGGggCGUG-------UGACGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 4529 | 0.66 | 0.457387 |
Target: 5'- gAUCGCUGCGCgUCGUcggACucggccggguguucaACUGCGgGCg -3' miRNA: 3'- -UAGUGACGCGgGGCG---UG---------------UGACGUgCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 32229 | 0.66 | 0.482171 |
Target: 5'- --aGCUGCGCaaaCCGUuuggggguauucgGCGCUGUuCGCg -3' miRNA: 3'- uagUGACGCGg--GGCG-------------UGUGACGuGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 30462 | 0.66 | 0.482171 |
Target: 5'- gGUUACUGCGCCUagaugauCugGCUGCcaagcuucuaccaACGCg -3' miRNA: 3'- -UAGUGACGCGGGgc-----GugUGACG-------------UGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 26018 | 0.67 | 0.435201 |
Target: 5'- uUC-CUGCGCucgacgcagauCCUGCACACcaugcaccgguuccgGCGCGCg -3' miRNA: 3'- uAGuGACGCG-----------GGGCGUGUGa--------------CGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 12550 | 0.67 | 0.433301 |
Target: 5'- --uGCUGCGCCUCGgACAgccgcauCUGCGCu- -3' miRNA: 3'- uagUGACGCGGGGCgUGU-------GACGUGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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