miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18974 5' -59.2 NC_004683.1 + 5116 0.66 0.470192
Target:  5'- --aGCUGCGUgCCCGgGCGCUGUcggccaucgagaagAUGCa -3'
miRNA:   3'- uagUGACGCG-GGGCgUGUGACG--------------UGCG- -5'
18974 5' -59.2 NC_004683.1 + 39077 0.69 0.314093
Target:  5'- -gCGCUGCGUCUCGCGgcugaccaaUACgaGCGCGCc -3'
miRNA:   3'- uaGUGACGCGGGGCGU---------GUGa-CGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 45479 0.68 0.353951
Target:  5'- cUCGCgcgcgacGCGCCCCGCACcgACcgGCucguCGCc -3'
miRNA:   3'- uAGUGa------CGCGGGGCGUG--UGa-CGu---GCG- -5'
18974 5' -59.2 NC_004683.1 + 30783 0.68 0.388322
Target:  5'- cGUCgGCUGCGCaCgCCGCccggaACGCcgucagUGCGCGCa -3'
miRNA:   3'- -UAG-UGACGCG-G-GGCG-----UGUG------ACGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 41078 0.67 0.424813
Target:  5'- cAUCACcacguaguaaGCgGCCCCGCGCcGCUGcCACGg -3'
miRNA:   3'- -UAGUGa---------CG-CGGGGCGUG-UGAC-GUGCg -5'
18974 5' -59.2 NC_004683.1 + 51539 0.67 0.424813
Target:  5'- cAUCACgcacggcagGCGCgCCGC-CAgcGCACGCa -3'
miRNA:   3'- -UAGUGa--------CGCGgGGCGuGUgaCGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 5744 0.67 0.434251
Target:  5'- cGUCACcGCGCUCgCGgGCACcGC-CGCc -3'
miRNA:   3'- -UAGUGaCGCGGG-GCgUGUGaCGuGCG- -5'
18974 5' -59.2 NC_004683.1 + 26018 0.67 0.435201
Target:  5'- uUC-CUGCGCucgacgcagauCCUGCACACcaugcaccgguuccgGCGCGCg -3'
miRNA:   3'- uAGuGACGCG-----------GGGCGUGUGa--------------CGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 43779 0.66 0.453485
Target:  5'- cAUCGCUaaGCaGUCCCuCgACgACUGCACGCa -3'
miRNA:   3'- -UAGUGA--CG-CGGGGcG-UG-UGACGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 1687 0.7 0.291855
Target:  5'- gAUCGCaGCGCggCCgGCGCGCUGC-UGCc -3'
miRNA:   3'- -UAGUGaCGCG--GGgCGUGUGACGuGCG- -5'
18974 5' -59.2 NC_004683.1 + 51197 0.7 0.270867
Target:  5'- -----cGCGCCCCGCACGa-GCGCGa -3'
miRNA:   3'- uagugaCGCGGGGCGUGUgaCGUGCg -5'
18974 5' -59.2 NC_004683.1 + 5251 0.7 0.268163
Target:  5'- cGUCGCcgGCGUaCCUGCGCGCcuggucgaagaugGCACGCa -3'
miRNA:   3'- -UAGUGa-CGCG-GGGCGUGUGa------------CGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 44812 0.73 0.174193
Target:  5'- uUCAagUUGCGCCUgGCcgaGCUGCACGCc -3'
miRNA:   3'- uAGU--GACGCGGGgCGug-UGACGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 24635 0.73 0.178431
Target:  5'- cGUCACcgGCGCCCaggccgccgaguuCGCGCGcCUGCuGCGCa -3'
miRNA:   3'- -UAGUGa-CGCGGG-------------GCGUGU-GACG-UGCG- -5'
18974 5' -59.2 NC_004683.1 + 7310 0.71 0.226635
Target:  5'- cUCACcGCGCCCCcaaccGCgGCGgUGCugGCa -3'
miRNA:   3'- uAGUGaCGCGGGG-----CG-UGUgACGugCG- -5'
18974 5' -59.2 NC_004683.1 + 44428 0.71 0.226635
Target:  5'- cGUCGC-GCGCacaaCGCGCGCaGCGCGCc -3'
miRNA:   3'- -UAGUGaCGCGgg--GCGUGUGaCGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 1024 0.71 0.24417
Target:  5'- -gCGCUGCGCCaCGCGCACauggguucacucaUGCccACGCu -3'
miRNA:   3'- uaGUGACGCGGgGCGUGUG-------------ACG--UGCG- -5'
18974 5' -59.2 NC_004683.1 + 49312 0.71 0.251111
Target:  5'- cGUgGCUGacCGCCCCgacuGCGCGCUGUGCGg -3'
miRNA:   3'- -UAgUGAC--GCGGGG----CGUGUGACGUGCg -5'
18974 5' -59.2 NC_004683.1 + 14224 0.7 0.257561
Target:  5'- cGUgGCcGCGaCCCGCAgCACUGC-CGCa -3'
miRNA:   3'- -UAgUGaCGCgGGGCGU-GUGACGuGCG- -5'
18974 5' -59.2 NC_004683.1 + 21657 0.7 0.257561
Target:  5'- -gCGCgGCGUccauauCCCGUGgACUGCGCGCa -3'
miRNA:   3'- uaGUGaCGCG------GGGCGUgUGACGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.