miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18974 5' -59.2 NC_004683.1 + 1024 0.71 0.24417
Target:  5'- -gCGCUGCGCCaCGCGCACauggguucacucaUGCccACGCu -3'
miRNA:   3'- uaGUGACGCGGgGCGUGUG-------------ACG--UGCG- -5'
18974 5' -59.2 NC_004683.1 + 1687 0.7 0.291855
Target:  5'- gAUCGCaGCGCggCCgGCGCGCUGC-UGCc -3'
miRNA:   3'- -UAGUGaCGCG--GGgCGUGUGACGuGCG- -5'
18974 5' -59.2 NC_004683.1 + 2316 0.68 0.365733
Target:  5'- cUCACgaacCGCUCCcgucgucaugcagcaGCACACgGCACGCg -3'
miRNA:   3'- uAGUGac--GCGGGG---------------CGUGUGaCGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 4529 0.66 0.457387
Target:  5'- gAUCGCUGCGCgUCGUcggACucggccggguguucaACUGCGgGCg -3'
miRNA:   3'- -UAGUGACGCGgGGCG---UG---------------UGACGUgCG- -5'
18974 5' -59.2 NC_004683.1 + 5116 0.66 0.470192
Target:  5'- --aGCUGCGUgCCCGgGCGCUGUcggccaucgagaagAUGCa -3'
miRNA:   3'- uagUGACGCG-GGGCgUGUGACG--------------UGCG- -5'
18974 5' -59.2 NC_004683.1 + 5225 0.72 0.207991
Target:  5'- uGUCGCUgGCGCCCUGCAUcuucucgauggccgACagcgcccggGCACGCa -3'
miRNA:   3'- -UAGUGA-CGCGGGGCGUG--------------UGa--------CGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 5251 0.7 0.268163
Target:  5'- cGUCGCcgGCGUaCCUGCGCGCcuggucgaagaugGCACGCa -3'
miRNA:   3'- -UAGUGa-CGCG-GGGCGUGUGa------------CGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 5589 0.67 0.443809
Target:  5'- --aACUcgGCGUCCCaGCucCACUGCACGg -3'
miRNA:   3'- uagUGA--CGCGGGG-CGu-GUGACGUGCg -5'
18974 5' -59.2 NC_004683.1 + 5744 0.67 0.434251
Target:  5'- cGUCACcGCGCUCgCGgGCACcGC-CGCc -3'
miRNA:   3'- -UAGUGaCGCGGG-GCgUGUGaCGuGCG- -5'
18974 5' -59.2 NC_004683.1 + 7310 0.71 0.226635
Target:  5'- cUCACcGCGCCCCcaaccGCgGCGgUGCugGCa -3'
miRNA:   3'- uAGUGaCGCGGGG-----CG-UGUgACGugCG- -5'
18974 5' -59.2 NC_004683.1 + 8560 0.66 0.493281
Target:  5'- gAUCGCcgugGCGUUCCGCgacGCACUcgGUACGUc -3'
miRNA:   3'- -UAGUGa---CGCGGGGCG---UGUGA--CGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 12032 0.69 0.337589
Target:  5'- --gGCgGUaGCCCCGCGCGg-GCGCGCu -3'
miRNA:   3'- uagUGaCG-CGGGGCGUGUgaCGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 12110 0.69 0.337589
Target:  5'- --gGCgGUaGCCCCGCGCGg-GCGCGCu -3'
miRNA:   3'- uagUGaCG-CGGGGCGUGUgaCGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 12550 0.67 0.433301
Target:  5'- --uGCUGCGCCUCGgACAgccgcauCUGCGCu- -3'
miRNA:   3'- uagUGACGCGGGGCgUGU-------GACGUGcg -5'
18974 5' -59.2 NC_004683.1 + 12794 0.68 0.379526
Target:  5'- -----cGCGCCCCGCGCGCcgaGgAUGCc -3'
miRNA:   3'- uagugaCGCGGGGCGUGUGa--CgUGCG- -5'
18974 5' -59.2 NC_004683.1 + 13084 0.67 0.434251
Target:  5'- -cCACcgGCGCCCgGCaggaagccGCGCU-CGCGCa -3'
miRNA:   3'- uaGUGa-CGCGGGgCG--------UGUGAcGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 14224 0.7 0.257561
Target:  5'- cGUgGCcGCGaCCCGCAgCACUGC-CGCa -3'
miRNA:   3'- -UAgUGaCGCgGGGCGU-GUGACGuGCG- -5'
18974 5' -59.2 NC_004683.1 + 17978 0.66 0.487206
Target:  5'- -cCACUGCGCUgUGUggcguugagcugaacGCGCUGCgGCGUc -3'
miRNA:   3'- uaGUGACGCGGgGCG---------------UGUGACG-UGCG- -5'
18974 5' -59.2 NC_004683.1 + 18117 0.66 0.503482
Target:  5'- gAUCGCgGuCGCCgCCgGCACcuACcGCACGCc -3'
miRNA:   3'- -UAGUGaC-GCGG-GG-CGUG--UGaCGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 21657 0.7 0.257561
Target:  5'- -gCGCgGCGUccauauCCCGUGgACUGCGCGCa -3'
miRNA:   3'- uaGUGaCGCG------GGGCGUgUGACGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.