Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18974 | 5' | -59.2 | NC_004683.1 | + | 56294 | 1.08 | 0.000404 |
Target: 5'- gAUCACUGCGCCCCGCACACUGCACGCc -3' miRNA: 3'- -UAGUGACGCGGGGCGUGUGACGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 31986 | 0.75 | 0.129244 |
Target: 5'- --aGCU-CGCCCCGCugGCUGCACcgGCc -3' miRNA: 3'- uagUGAcGCGGGGCGugUGACGUG--CG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 44534 | 0.73 | 0.164651 |
Target: 5'- -gCACgucggGCGCCggcgcggUgGCGCGCUGCGCGCg -3' miRNA: 3'- uaGUGa----CGCGG-------GgCGUGUGACGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 44812 | 0.73 | 0.174193 |
Target: 5'- uUCAagUUGCGCCUgGCcgaGCUGCACGCc -3' miRNA: 3'- uAGU--GACGCGGGgCGug-UGACGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 24635 | 0.73 | 0.178431 |
Target: 5'- cGUCACcgGCGCCCaggccgccgaguuCGCGCGcCUGCuGCGCa -3' miRNA: 3'- -UAGUGa-CGCGGG-------------GCGUGU-GACG-UGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 25371 | 0.73 | 0.178908 |
Target: 5'- cUCGCUGUGCgCCUGCAgGCccgGCAgCGCg -3' miRNA: 3'- uAGUGACGCG-GGGCGUgUGa--CGU-GCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 5225 | 0.72 | 0.207991 |
Target: 5'- uGUCGCUgGCGCCCUGCAUcuucucgauggccgACagcgcccggGCACGCa -3' miRNA: 3'- -UAGUGA-CGCGGGGCGUG--------------UGa--------CGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 7310 | 0.71 | 0.226635 |
Target: 5'- cUCACcGCGCCCCcaaccGCgGCGgUGCugGCa -3' miRNA: 3'- uAGUGaCGCGGGG-----CG-UGUgACGugCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 44428 | 0.71 | 0.226635 |
Target: 5'- cGUCGC-GCGCacaaCGCGCGCaGCGCGCc -3' miRNA: 3'- -UAGUGaCGCGgg--GCGUGUGaCGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 56339 | 0.71 | 0.238611 |
Target: 5'- -gUAC-GUGUCCUGCGCGCUGUAgCGCg -3' miRNA: 3'- uaGUGaCGCGGGGCGUGUGACGU-GCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 1024 | 0.71 | 0.24417 |
Target: 5'- -gCGCUGCGCCaCGCGCACauggguucacucaUGCccACGCu -3' miRNA: 3'- uaGUGACGCGGgGCGUGUG-------------ACG--UGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 49312 | 0.71 | 0.251111 |
Target: 5'- cGUgGCUGacCGCCCCgacuGCGCGCUGUGCGg -3' miRNA: 3'- -UAgUGAC--GCGGGG----CGUGUGACGUGCg -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 14224 | 0.7 | 0.257561 |
Target: 5'- cGUgGCcGCGaCCCGCAgCACUGC-CGCa -3' miRNA: 3'- -UAgUGaCGCgGGGCGU-GUGACGuGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 21657 | 0.7 | 0.257561 |
Target: 5'- -gCGCgGCGUccauauCCCGUGgACUGCGCGCa -3' miRNA: 3'- uaGUGaCGCG------GGGCGUgUGACGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 5251 | 0.7 | 0.268163 |
Target: 5'- cGUCGCcgGCGUaCCUGCGCGCcuggucgaagaugGCACGCa -3' miRNA: 3'- -UAGUGa-CGCG-GGGCGUGUGa------------CGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 51197 | 0.7 | 0.270867 |
Target: 5'- -----cGCGCCCCGCACGa-GCGCGa -3' miRNA: 3'- uagugaCGCGGGGCGUGUgaCGUGCg -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 1687 | 0.7 | 0.291855 |
Target: 5'- gAUCGCaGCGCggCCgGCGCGCUGC-UGCc -3' miRNA: 3'- -UAGUGaCGCG--GGgCGUGUGACGuGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 39077 | 0.69 | 0.314093 |
Target: 5'- -gCGCUGCGUCUCGCGgcugaccaaUACgaGCGCGCc -3' miRNA: 3'- uaGUGACGCGGGGCGU---------GUGa-CGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 12032 | 0.69 | 0.337589 |
Target: 5'- --gGCgGUaGCCCCGCGCGg-GCGCGCu -3' miRNA: 3'- uagUGaCG-CGGGGCGUGUgaCGUGCG- -5' |
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18974 | 5' | -59.2 | NC_004683.1 | + | 12110 | 0.69 | 0.337589 |
Target: 5'- --gGCgGUaGCCCCGCGCGg-GCGCGCu -3' miRNA: 3'- uagUGaCG-CGGGGCGUGUgaCGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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