miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18975 5' -55.2 NC_004683.1 + 3807 0.66 0.755559
Target:  5'- aGGG-UGAgGCCgucguuuGGCU-CACCGUccucGCCGg -3'
miRNA:   3'- -CCCaACUgUGG-------UCGAuGUGGCA----CGGC- -5'
18975 5' -55.2 NC_004683.1 + 24931 0.66 0.74629
Target:  5'- cGGGUUGccgaACUGGaugACGCCGUugaGCCGg -3'
miRNA:   3'- -CCCAACug--UGGUCga-UGUGGCA---CGGC- -5'
18975 5' -55.2 NC_004683.1 + 46575 0.66 0.74629
Target:  5'- cGGUacUGGCugCcGCUGC-UgGUGCCGg -3'
miRNA:   3'- cCCA--ACUGugGuCGAUGuGgCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 6768 0.66 0.74629
Target:  5'- cGGGcgacacgUGccagccACACCAGCggcGCGCCGcgGCCa -3'
miRNA:   3'- -CCCa------AC------UGUGGUCGa--UGUGGCa-CGGc -5'
18975 5' -55.2 NC_004683.1 + 46974 0.66 0.74629
Target:  5'- cGGGUgGGCACCA-CUcCcCCGuUGCCGu -3'
miRNA:   3'- -CCCAaCUGUGGUcGAuGuGGC-ACGGC- -5'
18975 5' -55.2 NC_004683.1 + 21800 0.66 0.735883
Target:  5'- uGGGUUGAauCCGGCgGCGCUGccagcGCCa -3'
miRNA:   3'- -CCCAACUguGGUCGaUGUGGCa----CGGc -5'
18975 5' -55.2 NC_004683.1 + 3834 0.66 0.735883
Target:  5'- cGGUUGaACACC----GCGCCGUaGCCGu -3'
miRNA:   3'- cCCAAC-UGUGGucgaUGUGGCA-CGGC- -5'
18975 5' -55.2 NC_004683.1 + 47031 0.66 0.735883
Target:  5'- uGGUggcGCAUCAGCaGCG-CGUGCCGc -3'
miRNA:   3'- cCCAac-UGUGGUCGaUGUgGCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 23556 0.66 0.725373
Target:  5'- cGGG-UGAUcggACCAGUUAagguccauCGCgGUGCCGc -3'
miRNA:   3'- -CCCaACUG---UGGUCGAU--------GUGgCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 43929 0.66 0.725373
Target:  5'- -cGUUGACACCgGGCUcgAgACCGagcgcgGCCGa -3'
miRNA:   3'- ccCAACUGUGG-UCGA--UgUGGCa-----CGGC- -5'
18975 5' -55.2 NC_004683.1 + 5365 0.66 0.725373
Target:  5'- aGGccGACGgCGGCUACcUgGUGCCGu -3'
miRNA:   3'- cCCaaCUGUgGUCGAUGuGgCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 2132 0.66 0.725373
Target:  5'- uGGUgGugGCgGGCgugGCCGUGCUGg -3'
miRNA:   3'- cCCAaCugUGgUCGaugUGGCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 8578 0.66 0.714771
Target:  5'- cGGUcgUGuagcCACCAGCcGCGggagUCGUGCCGg -3'
miRNA:   3'- cCCA--ACu---GUGGUCGaUGU----GGCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 23813 0.66 0.714771
Target:  5'- gGGGUcGGCGCCGGgguggugcCgcCGCCGgUGCCGc -3'
miRNA:   3'- -CCCAaCUGUGGUC--------GauGUGGC-ACGGC- -5'
18975 5' -55.2 NC_004683.1 + 1777 0.66 0.714771
Target:  5'- aGGUcaGGCAgCAGC-GCGCCG-GCCGc -3'
miRNA:   3'- cCCAa-CUGUgGUCGaUGUGGCaCGGC- -5'
18975 5' -55.2 NC_004683.1 + 18368 0.67 0.704089
Target:  5'- cGGGcccGACugCAGCacgacGCGCUGUGUCu -3'
miRNA:   3'- -CCCaa-CUGugGUCGa----UGUGGCACGGc -5'
18975 5' -55.2 NC_004683.1 + 3531 0.67 0.693337
Target:  5'- cGGGUgaucuGCGCCuGCUcaagcACACCG-GCCu -3'
miRNA:   3'- -CCCAac---UGUGGuCGA-----UGUGGCaCGGc -5'
18975 5' -55.2 NC_004683.1 + 4227 0.67 0.693337
Target:  5'- cGGUgacGugGCCGGcCUACGCCGacacuucagUGUCGa -3'
miRNA:   3'- cCCAa--CugUGGUC-GAUGUGGC---------ACGGC- -5'
18975 5' -55.2 NC_004683.1 + 13125 0.67 0.682527
Target:  5'- cGGaggGGCAUCGGCgGgACCGgUGCCGa -3'
miRNA:   3'- cCCaa-CUGUGGUCGaUgUGGC-ACGGC- -5'
18975 5' -55.2 NC_004683.1 + 28365 0.67 0.682527
Target:  5'- ---aUGACGCCAGCcaACACgGaGCCGa -3'
miRNA:   3'- cccaACUGUGGUCGa-UGUGgCaCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.