Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 41451 | 0.68 | 0.273518 |
Target: 5'- cGCCGgugucaguggggcUGACCCCGGCGgUGCuGGCCa--- -3' miRNA: 3'- -UGGC-------------ACUGGGGCCGC-AUG-CCGGggag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 40369 | 0.68 | 0.267751 |
Target: 5'- gGCCuugggGGCCUCGGCGgugGCGG-CCUUCg -3' miRNA: 3'- -UGGca---CUGGGGCCGCa--UGCCgGGGAG- -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 39436 | 0.86 | 0.01292 |
Target: 5'- gACCGUGGCCCCaggccgaGGCGUGCGGCUaCCUCg -3' miRNA: 3'- -UGGCACUGGGG-------CCGCAUGCCGG-GGAG- -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 37579 | 0.67 | 0.308084 |
Target: 5'- aGCUGgagGugCCCGGCaucgguaccGUGCGGgCCCg- -3' miRNA: 3'- -UGGCa--CugGGGCCG---------CAUGCCgGGGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 34072 | 0.66 | 0.37697 |
Target: 5'- cACCGgcGACCCUGGCGcgGCGGgCgCg- -3' miRNA: 3'- -UGGCa-CUGGGGCCGCa-UGCCgGgGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 33828 | 0.7 | 0.205012 |
Target: 5'- gGCgGUGugCCCGGCGgcgGCGGCaaCg- -3' miRNA: 3'- -UGgCACugGGGCCGCa--UGCCGggGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 33461 | 0.66 | 0.37697 |
Target: 5'- cGCUGUGgucuGCCUCGGCG-GCGGCUgCg- -3' miRNA: 3'- -UGGCAC----UGGGGCCGCaUGCCGGgGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 33197 | 0.69 | 0.24804 |
Target: 5'- cACCGUGGCCauGGCGacggacagcccgGCGGCCCa-- -3' miRNA: 3'- -UGGCACUGGggCCGCa-----------UGCCGGGgag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 32812 | 0.66 | 0.385238 |
Target: 5'- cACCGUGugCagCGGCGUggAUGGUUCC-Ca -3' miRNA: 3'- -UGGCACugGg-GCCGCA--UGCCGGGGaG- -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 28423 | 0.67 | 0.340508 |
Target: 5'- uGCUGguugcgcuugGACCCCGGCGcgUacucguucaugaugcGCGGCUCCUg -3' miRNA: 3'- -UGGCa---------CUGGGGCCGC--A---------------UGCCGGGGAg -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 28056 | 0.68 | 0.255287 |
Target: 5'- uGCCGguggucGGCCCCGGCGgugugGCcgGGCCgCCg- -3' miRNA: 3'- -UGGCa-----CUGGGGCCGCa----UG--CCGG-GGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 26440 | 0.67 | 0.315241 |
Target: 5'- cGCCgGUGG-CCCGGUGUACGGCggcacgCCUg -3' miRNA: 3'- -UGG-CACUgGGGCCGCAUGCCGg-----GGAg -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 25347 | 0.68 | 0.287361 |
Target: 5'- cCCgGUGGCCuuGGCG-GCGGCCUg-- -3' miRNA: 3'- uGG-CACUGGggCCGCaUGCCGGGgag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 25316 | 0.71 | 0.180953 |
Target: 5'- uUCGUcGGCCCUGGCGgcguaugGCGGCCUCc- -3' miRNA: 3'- uGGCA-CUGGGGCCGCa------UGCCGGGGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 25006 | 0.66 | 0.352896 |
Target: 5'- cGCCGcccagcgcgcUGAUCgCGGCG-GCGGCCaUCUCg -3' miRNA: 3'- -UGGC----------ACUGGgGCCGCaUGCCGG-GGAG- -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 22257 | 0.68 | 0.255288 |
Target: 5'- cGCCGUGGCCCU-GCGgu--GCUCCUCg -3' miRNA: 3'- -UGGCACUGGGGcCGCaugcCGGGGAG- -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 20246 | 0.68 | 0.274165 |
Target: 5'- cGCCGguacuacuuccGGCCCgGcGCGUuccCGGCCCCUg -3' miRNA: 3'- -UGGCa----------CUGGGgC-CGCAu--GCCGGGGAg -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 19443 | 0.66 | 0.384405 |
Target: 5'- cACCGUGcgcccauGCCCgGGCGgcgGUGGCCCg-- -3' miRNA: 3'- -UGGCAC-------UGGGgCCGCa--UGCCGGGgag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 15978 | 0.68 | 0.287361 |
Target: 5'- gGCCGUGACaCCGGCagaggccgaaacGUcCGGCUCCg- -3' miRNA: 3'- -UGGCACUGgGGCCG------------CAuGCCGGGGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 13258 | 0.66 | 0.368824 |
Target: 5'- gGCCGUGACCgCCaGCGcGCugguGGCCgCCg- -3' miRNA: 3'- -UGGCACUGG-GGcCGCaUG----CCGG-GGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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