miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 5' -54.9 NC_004684.1 + 59068 0.71 0.528384
Target:  5'- gCCGAacgguaaccagcgcgGCAGCUCGGcGGACaGGGcccGGCGCa -3'
miRNA:   3'- -GGCU---------------UGUCGAGCC-UUUGgCCC---UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 7410 0.72 0.434473
Target:  5'- aCCGAGCAcGCgUCGGccauGGCCGGGuuCGCg -3'
miRNA:   3'- -GGCUUGU-CG-AGCCu---UUGGCCCucGUG- -5'
18979 5' -54.9 NC_004684.1 + 59695 0.66 0.816019
Target:  5'- gUCGAGCAuugguGCgCGGGauguGACCGGGuGGUGCg -3'
miRNA:   3'- -GGCUUGU-----CGaGCCU----UUGGCCC-UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 24048 0.67 0.737599
Target:  5'- uCCGggUuguacaGGCUCGGcAGgCGGGugccGCGCa -3'
miRNA:   3'- -GGCuuG------UCGAGCCuUUgGCCCu---CGUG- -5'
18979 5' -54.9 NC_004684.1 + 36719 0.69 0.641794
Target:  5'- aCGAaccGCAGCUCcacgcgugccuGGAAcgucucACCGGGGGcCACc -3'
miRNA:   3'- gGCU---UGUCGAG-----------CCUU------UGGCCCUC-GUG- -5'
18979 5' -54.9 NC_004684.1 + 23997 0.74 0.354285
Target:  5'- gCGAGCuguuGCUCGGucGAGCCGGG-GCGg -3'
miRNA:   3'- gGCUUGu---CGAGCC--UUUGGCCCuCGUg -5'
18979 5' -54.9 NC_004684.1 + 3031 0.67 0.736566
Target:  5'- gCCGAugGccucgguGCUCGGc-ACCGGaGGCACc -3'
miRNA:   3'- -GGCUugU-------CGAGCCuuUGGCCcUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 34264 0.74 0.354285
Target:  5'- uUGAGCgugAGCUCGGGcguGCCGGuGAGCAg -3'
miRNA:   3'- gGCUUG---UCGAGCCUu--UGGCC-CUCGUg -5'
18979 5' -54.9 NC_004684.1 + 22577 0.74 0.337942
Target:  5'- aCCGAGCGGUUggccgcugccaGGGAACCGgccuGGAGCGCg -3'
miRNA:   3'- -GGCUUGUCGAg----------CCUUUGGC----CCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 18556 0.69 0.648284
Target:  5'- aCCGAcagcacCAGCUCGGugccgucguccuGCuCGGGAGcCACg -3'
miRNA:   3'- -GGCUu-----GUCGAGCCuu----------UG-GCCCUC-GUG- -5'
18979 5' -54.9 NC_004684.1 + 52750 0.66 0.777976
Target:  5'- -aGAGguGCU-GGccACCuGGGAGCGCa -3'
miRNA:   3'- ggCUUguCGAgCCuuUGG-CCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 16495 0.71 0.499504
Target:  5'- aCCGAACAGCaccgucugggugCGGAuguagucgauguGCCGGGuGUACu -3'
miRNA:   3'- -GGCUUGUCGa-----------GCCUu-----------UGGCCCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 18446 0.72 0.462467
Target:  5'- gUCGAGCGGCaccgcgccgccggUCGGcu-CCGGGGGCGg -3'
miRNA:   3'- -GGCUUGUCG-------------AGCCuuuGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 10667 0.67 0.716751
Target:  5'- gCCGAAcCAGC-CGGAucGGCgGGGAaCGCc -3'
miRNA:   3'- -GGCUU-GUCGaGCCU--UUGgCCCUcGUG- -5'
18979 5' -54.9 NC_004684.1 + 9595 0.67 0.747875
Target:  5'- gCUGGcGCAGCUCguacgGGAguGACCGGGuacggcuGCGCu -3'
miRNA:   3'- -GGCU-UGUCGAG-----CCU--UUGGCCCu------CGUG- -5'
18979 5' -54.9 NC_004684.1 + 13121 0.66 0.816019
Target:  5'- gCCGAcCGGCcCGGcgacguAACCGGGcGCGu -3'
miRNA:   3'- -GGCUuGUCGaGCCu-----UUGGCCCuCGUg -5'
18979 5' -54.9 NC_004684.1 + 54330 0.69 0.649365
Target:  5'- uCCGAgggcauagcacagcGCGGCggUGGAGauguuggcaaguGCCGGGGGCGg -3'
miRNA:   3'- -GGCU--------------UGUCGa-GCCUU------------UGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 30023 0.67 0.747875
Target:  5'- gCCGAgcuACAGCagaaGAcACCGGGGGCGa -3'
miRNA:   3'- -GGCU---UGUCGagc-CUuUGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 40697 0.67 0.737599
Target:  5'- aCGAACuucagcugGGCggCGGugGCCGGGAcgaccaGCGCg -3'
miRNA:   3'- gGCUUG--------UCGa-GCCuuUGGCCCU------CGUG- -5'
18979 5' -54.9 NC_004684.1 + 43240 0.67 0.737599
Target:  5'- cUCGc-CAGCgcgCGG--GCCGGaGAGCACg -3'
miRNA:   3'- -GGCuuGUCGa--GCCuuUGGCC-CUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.