miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18980 5' -59.4 NC_004684.1 + 41988 0.7 0.379648
Target:  5'- uGCCCGcgCGGUGGccGCuGGCGacaaccUCCUGGa -3'
miRNA:   3'- -UGGGCa-GCCGCUaaCG-CCGC------AGGACC- -5'
18980 5' -59.4 NC_004684.1 + 41426 0.71 0.309126
Target:  5'- cCCCGU-GGCGGUggUGCGGCGgugCCgccGGu -3'
miRNA:   3'- uGGGCAgCCGCUA--ACGCCGCa--GGa--CC- -5'
18980 5' -59.4 NC_004684.1 + 41417 0.72 0.281145
Target:  5'- -gCCGUCGGCGGUcGCGGUG-CCg-- -3'
miRNA:   3'- ugGGCAGCCGCUAaCGCCGCaGGacc -5'
18980 5' -59.4 NC_004684.1 + 39321 0.67 0.495797
Target:  5'- gACCCGUCGGCGcgcaagaucaGCGaGCGguaccccgaccccUUCUGGg -3'
miRNA:   3'- -UGGGCAGCCGCuaa-------CGC-CGC-------------AGGACC- -5'
18980 5' -59.4 NC_004684.1 + 39063 0.66 0.579687
Target:  5'- gACCCG-CGcGCGAacaccucggUGCGGUG-CUUGGu -3'
miRNA:   3'- -UGGGCaGC-CGCUa--------ACGCCGCaGGACC- -5'
18980 5' -59.4 NC_004684.1 + 37433 0.72 0.281145
Target:  5'- cGCUCGcCGGuCGGUUGCGGCGggcuuUCCaGGu -3'
miRNA:   3'- -UGGGCaGCC-GCUAACGCCGC-----AGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 35434 0.73 0.249044
Target:  5'- cACCgCGUCcacuuGGCGAaUGCGGUGUgCUUGGg -3'
miRNA:   3'- -UGG-GCAG-----CCGCUaACGCCGCA-GGACC- -5'
18980 5' -59.4 NC_004684.1 + 34320 0.73 0.220032
Target:  5'- cGCCCGUUGGCccg-GCGGUGUCCc-- -3'
miRNA:   3'- -UGGGCAGCCGcuaaCGCCGCAGGacc -5'
18980 5' -59.4 NC_004684.1 + 33849 0.7 0.379648
Target:  5'- uCCCGUUGuaGCuGAggucgGgGGCGUCCUGGc -3'
miRNA:   3'- uGGGCAGC--CG-CUaa---CgCCGCAGGACC- -5'
18980 5' -59.4 NC_004684.1 + 33819 0.66 0.600443
Target:  5'- --gCGUCGGCGg--GCGGUGUgCCcGGc -3'
miRNA:   3'- uggGCAGCCGCuaaCGCCGCA-GGaCC- -5'
18980 5' -59.4 NC_004684.1 + 31188 0.66 0.572456
Target:  5'- cGCCUGcgCGGCGuccugccagcccucgGCGGCacguUCCUGGa -3'
miRNA:   3'- -UGGGCa-GCCGCuaa------------CGCCGc---AGGACC- -5'
18980 5' -59.4 NC_004684.1 + 30160 0.67 0.528597
Target:  5'- gGCCaGUgGGCGAUcaacgccgucgGCGGCGagCUGGu -3'
miRNA:   3'- -UGGgCAgCCGCUAa----------CGCCGCagGACC- -5'
18980 5' -59.4 NC_004684.1 + 29532 0.72 0.255213
Target:  5'- cGCUgGUCGGUGGUUGcCGGUGUaccgauUCUGGg -3'
miRNA:   3'- -UGGgCAGCCGCUAAC-GCCGCA------GGACC- -5'
18980 5' -59.4 NC_004684.1 + 29350 0.68 0.488957
Target:  5'- -gCUGUCGGCGGUcgGCGGUGaugCCUugaauGGg -3'
miRNA:   3'- ugGGCAGCCGCUAa-CGCCGCa--GGA-----CC- -5'
18980 5' -59.4 NC_004684.1 + 27787 0.73 0.225594
Target:  5'- cGCCCGaCGGUGcgcgGCGGUucgGUCCUGGc -3'
miRNA:   3'- -UGGGCaGCCGCuaa-CGCCG---CAGGACC- -5'
18980 5' -59.4 NC_004684.1 + 27687 0.77 0.131367
Target:  5'- gACCCGUcCGGUGAUUGCGGC---CUGGu -3'
miRNA:   3'- -UGGGCA-GCCGCUAACGCCGcagGACC- -5'
18980 5' -59.4 NC_004684.1 + 26417 0.68 0.441474
Target:  5'- cACCgCGUCGGCaAUcgGCGGCccggcggCCUGGc -3'
miRNA:   3'- -UGG-GCAGCCGcUAa-CGCCGca-----GGACC- -5'
18980 5' -59.4 NC_004684.1 + 25991 0.68 0.479262
Target:  5'- aACCCGcUGGCGcuccugGCGGCGgCCgGGu -3'
miRNA:   3'- -UGGGCaGCCGCuaa---CGCCGCaGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 24932 0.68 0.445178
Target:  5'- gGCCCGgUGGCGcUaccgcugccgcccugUGUGGUGUCCUGc -3'
miRNA:   3'- -UGGGCaGCCGCuA---------------ACGCCGCAGGACc -5'
18980 5' -59.4 NC_004684.1 + 22443 0.71 0.323894
Target:  5'- -gCCGUCGGCGcg-GCGGCGaUCCc-- -3'
miRNA:   3'- ugGGCAGCCGCuaaCGCCGC-AGGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.