miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 3' -57.1 NC_004684.1 + 42228 0.66 0.692792
Target:  5'- cGCCggugUCGGCaCcGGCGCGAAGaCGUg-- -3'
miRNA:   3'- -CGG----AGCCG-GuUCGCGCUUCcGCAagu -5'
18984 3' -57.1 NC_004684.1 + 62593 0.66 0.691732
Target:  5'- uGCCguugcggUCGGCCAccGCGCcGAGGCGcUUg -3'
miRNA:   3'- -CGG-------AGCCGGUu-CGCGcUUCCGCaAGu -5'
18984 3' -57.1 NC_004684.1 + 58060 0.66 0.68855
Target:  5'- uCCUCGGCCAgcagcgugcgcaccAGCcgcaGCGAgcaccgcAGGCGgUCGg -3'
miRNA:   3'- cGGAGCCGGU--------------UCG----CGCU-------UCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 20479 0.66 0.686426
Target:  5'- aCCUCGGCCucguGCGCGuacugcucgaacgucGGGGUGg--- -3'
miRNA:   3'- cGGAGCCGGuu--CGCGC---------------UUCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 49177 0.66 0.682173
Target:  5'- aGUCUCGGCgGcGGCgGCGgcGGCGg--- -3'
miRNA:   3'- -CGGAGCCGgU-UCG-CGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 65761 0.66 0.682173
Target:  5'- gGCgUUGGCCGccGCGCGccGGUGggCGc -3'
miRNA:   3'- -CGgAGCCGGUu-CGCGCuuCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 50409 0.66 0.682173
Target:  5'- cGCCU-GGCCGGGCGCaccGAcuGGGCa---- -3'
miRNA:   3'- -CGGAgCCGGUUCGCG---CU--UCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 52181 0.66 0.682173
Target:  5'- gGCCUggucgacgUGGCCGguGGCaUGGagcGGGCGUUCAa -3'
miRNA:   3'- -CGGA--------GCCGGU--UCGcGCU---UCCGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 890 0.66 0.682173
Target:  5'- cGCCaCGGCgAGGUGCagguGAGGGCcaUCAu -3'
miRNA:   3'- -CGGaGCCGgUUCGCG----CUUCCGcaAGU- -5'
18984 3' -57.1 NC_004684.1 + 63579 0.66 0.671509
Target:  5'- uCCaUCGGCCugcgcGGCGCGgcGGUGg--- -3'
miRNA:   3'- cGG-AGCCGGu----UCGCGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 5831 0.66 0.661881
Target:  5'- cCCUUGGCCguccacuuguggauGgcgaacggcaucugcGGCGCGAGGGCGcgCu -3'
miRNA:   3'- cGGAGCCGG--------------U---------------UCGCGCUUCCGCaaGu -5'
18984 3' -57.1 NC_004684.1 + 40363 0.66 0.66081
Target:  5'- gGCCUUGGCCuuggGGGCcucgGCGguGGCGgccuUCGg -3'
miRNA:   3'- -CGGAGCCGG----UUCG----CGCuuCCGCa---AGU- -5'
18984 3' -57.1 NC_004684.1 + 13122 0.66 0.650085
Target:  5'- aGCCgacCGGCCcGGCGaCGuaaccGGGCGcgUCGg -3'
miRNA:   3'- -CGGa--GCCGGuUCGC-GCu----UCCGCa-AGU- -5'
18984 3' -57.1 NC_004684.1 + 62497 0.66 0.650085
Target:  5'- aCCUgGGgC-AGCGCGAGGGCa---- -3'
miRNA:   3'- cGGAgCCgGuUCGCGCUUCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 42966 0.66 0.650085
Target:  5'- uGCCagaGGCCGGGCGUGc-GGCGg--- -3'
miRNA:   3'- -CGGag-CCGGUUCGCGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 43749 0.66 0.650085
Target:  5'- cGCCUCGGCUGacgguaccGGCGUGGucAGGCc---- -3'
miRNA:   3'- -CGGAGCCGGU--------UCGCGCU--UCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 40674 0.66 0.649012
Target:  5'- cGCgCUCGGCCAgcaagguGGCGaCGAacuucagcuGGGCGg--- -3'
miRNA:   3'- -CG-GAGCCGGU-------UCGC-GCU---------UCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 23987 0.66 0.639345
Target:  5'- -gCUCGGUCGAGC-CGG-GGCGgUCGg -3'
miRNA:   3'- cgGAGCCGGUUCGcGCUuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 51543 0.66 0.639345
Target:  5'- gGCCUCGGCCAccgGGCGCauGAGcuacGGCc---- -3'
miRNA:   3'- -CGGAGCCGGU---UCGCG--CUU----CCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 29920 0.66 0.639345
Target:  5'- uGCuCUCGcuuauggagcuGCC-AGCGUGAAGGUGUcggUCAc -3'
miRNA:   3'- -CG-GAGC-----------CGGuUCGCGCUUCCGCA---AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.