miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 3' -57.1 NC_004684.1 + 1953 0.67 0.58573
Target:  5'- cCUUCGGCCAGGUggauauGCGGcccGGCGUUg- -3'
miRNA:   3'- cGGAGCCGGUUCG------CGCUu--CCGCAAgu -5'
18984 3' -57.1 NC_004684.1 + 852 0.68 0.522672
Target:  5'- uGCCUCGGCgGuguccaggAGCGCcgccAGGGCG-UCGg -3'
miRNA:   3'- -CGGAGCCGgU--------UCGCGc---UUCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 16359 0.7 0.44313
Target:  5'- cGCgUCgGGCCcGGCGCGAacaccGGGCGagCGa -3'
miRNA:   3'- -CGgAG-CCGGuUCGCGCU-----UCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 63452 0.73 0.278468
Target:  5'- cGCgUCGGCCGcucGGUGCGcuGGGCGgUCAc -3'
miRNA:   3'- -CGgAGCCGGU---UCGCGCu-UCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 62497 0.66 0.650085
Target:  5'- aCCUgGGgC-AGCGCGAGGGCa---- -3'
miRNA:   3'- cGGAgCCgGuUCGCGCUUCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 38137 0.67 0.617855
Target:  5'- gGCCUCGGggguggucGGCGCGuacAGGGCGUcCAg -3'
miRNA:   3'- -CGGAGCCggu-----UCGCGC---UUCCGCAaGU- -5'
18984 3' -57.1 NC_004684.1 + 55555 0.69 0.511377
Target:  5'- uCCUCGGCCAGGCcuucaccGCGcuuGGCGa--- -3'
miRNA:   3'- cGGAGCCGGUUCG-------CGCuu-CCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 460 0.74 0.245744
Target:  5'- gGUCUCGGCCAGGuCGCGcauGGCcaUCAg -3'
miRNA:   3'- -CGGAGCCGGUUC-GCGCuu-CCGcaAGU- -5'
18984 3' -57.1 NC_004684.1 + 41636 0.67 0.617855
Target:  5'- aCC-CGGCCAGGUG-GAAGGCa---- -3'
miRNA:   3'- cGGaGCCGGUUCGCgCUUCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 13362 0.75 0.227682
Target:  5'- aGCCaccggCGGCCAccAGCGCGcuGGCGgUCAc -3'
miRNA:   3'- -CGGa----GCCGGU--UCGCGCuuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 12107 0.69 0.512399
Target:  5'- gGCCUUGGCCAccgccGcCGCGAAGuccuGCGgggUCAu -3'
miRNA:   3'- -CGGAGCCGGUu----C-GCGCUUC----CGCa--AGU- -5'
18984 3' -57.1 NC_004684.1 + 63560 0.67 0.58573
Target:  5'- gGCCUCGcgcccccgaauGCCGgaacugGGCgGCGAAGGCGacCAc -3'
miRNA:   3'- -CGGAGC-----------CGGU------UCG-CGCUUCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 8830 0.69 0.482108
Target:  5'- -gCUC-GCCGGGCGCGgcGGCGaaCAu -3'
miRNA:   3'- cgGAGcCGGUUCGCGCuuCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 23175 0.7 0.45271
Target:  5'- -gCUCGGCCuuGGUGaUGAAGGCG-UCGa -3'
miRNA:   3'- cgGAGCCGGu-UCGC-GCUUCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 41429 0.71 0.379452
Target:  5'- gGCCUUGGCCcGGC-CGucGGCGgUCGc -3'
miRNA:   3'- -CGGAGCCGGuUCGcGCuuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 40758 0.73 0.307076
Target:  5'- aCCUugcUGGCCGAGCGCGAcuGGCGg--- -3'
miRNA:   3'- cGGA---GCCGGUUCGCGCUu-CCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 50409 0.66 0.682173
Target:  5'- cGCCU-GGCCGGGCGCaccGAcuGGGCa---- -3'
miRNA:   3'- -CGGAgCCGGUUCGCG---CU--UCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 42966 0.66 0.650085
Target:  5'- uGCCagaGGCCGGGCGUGc-GGCGg--- -3'
miRNA:   3'- -CGGag-CCGGUUCGCGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 51543 0.66 0.639345
Target:  5'- gGCCUCGGCCAccgGGCGCauGAGcuacGGCc---- -3'
miRNA:   3'- -CGGAGCCGGU---UCGCG--CUU----CCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 23136 0.67 0.617855
Target:  5'- -gCUUGGCCAGGC-CGucaccAAGGCGUggCAg -3'
miRNA:   3'- cgGAGCCGGUUCGcGC-----UUCCGCAa-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.