miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 5' -59.2 NC_004684.1 + 47261 0.66 0.579809
Target:  5'- gGCUGCG-CGgaacAGGCCcUCCAGGUugGUg -3'
miRNA:   3'- -UGGCGCaGCa---UCCGGaAGGUCCG--CAg -5'
18988 5' -59.2 NC_004684.1 + 13863 0.66 0.579809
Target:  5'- uCCGCGcCGaccuGGCCaUUCaggaGGGUGUCg -3'
miRNA:   3'- uGGCGCaGCau--CCGG-AAGg---UCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 12842 0.66 0.579809
Target:  5'- aGCCGCG-CG--GGCCaagaGGGCGUCg -3'
miRNA:   3'- -UGGCGCaGCauCCGGaaggUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 50967 0.66 0.569328
Target:  5'- cGCCagcaCGUCGUAGGCCgaccCCuGGCa-- -3'
miRNA:   3'- -UGGc---GCAGCAUCCGGaa--GGuCCGcag -5'
18988 5' -59.2 NC_004684.1 + 3521 0.66 0.569328
Target:  5'- cGCCGaCGg-GUGGGCCgaCCuGGCGg- -3'
miRNA:   3'- -UGGC-GCagCAUCCGGaaGGuCCGCag -5'
18988 5' -59.2 NC_004684.1 + 37745 0.66 0.558894
Target:  5'- cACCGgGUCGau-GCCUgaCCGGGCGg- -3'
miRNA:   3'- -UGGCgCAGCaucCGGAa-GGUCCGCag -5'
18988 5' -59.2 NC_004684.1 + 64980 0.66 0.548515
Target:  5'- gACCGCGaCGcGGGUCUgcggcucgCCAgcGGCGUUg -3'
miRNA:   3'- -UGGCGCaGCaUCCGGAa-------GGU--CCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 57287 0.66 0.538197
Target:  5'- cAUCGCGcCGcc-GCCUUCCAGGCc-- -3'
miRNA:   3'- -UGGCGCaGCaucCGGAAGGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 59857 0.66 0.527945
Target:  5'- cGCCGCcaCGgcGGCCaggucggUCCGGGCagGUCc -3'
miRNA:   3'- -UGGCGcaGCauCCGGa------AGGUCCG--CAG- -5'
18988 5' -59.2 NC_004684.1 + 41861 0.67 0.517768
Target:  5'- gGCCGCGUcCGUAcgcccacuGGCUcaaCCGGGUGUa -3'
miRNA:   3'- -UGGCGCA-GCAU--------CCGGaa-GGUCCGCAg -5'
18988 5' -59.2 NC_004684.1 + 53196 0.67 0.517768
Target:  5'- cCCGCGUgaUGU-GGCCUUgCAGGCc-- -3'
miRNA:   3'- uGGCGCA--GCAuCCGGAAgGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 15165 0.67 0.50767
Target:  5'- cACCGCGcCGauaAGGCCgucgaccucaUCC-GGCGUCc -3'
miRNA:   3'- -UGGCGCaGCa--UCCGGa---------AGGuCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 13046 0.67 0.50767
Target:  5'- cGCCGCGUCGgcgGGaGCa--CCGGGgGUg -3'
miRNA:   3'- -UGGCGCAGCa--UC-CGgaaGGUCCgCAg -5'
18988 5' -59.2 NC_004684.1 + 10058 0.67 0.496659
Target:  5'- -gCGCGUCGaAGGCCU-CCAugaccguGGCGa- -3'
miRNA:   3'- ugGCGCAGCaUCCGGAaGGU-------CCGCag -5'
18988 5' -59.2 NC_004684.1 + 37429 0.67 0.487731
Target:  5'- cGCCG-GUCGguugcggcGGGCUUUCCAGGUa-- -3'
miRNA:   3'- -UGGCgCAGCa-------UCCGGAAGGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 6094 0.67 0.487731
Target:  5'- cACCGCGUCcgaugGUGcGCCUgagCCAGGCc-- -3'
miRNA:   3'- -UGGCGCAG-----CAUcCGGAa--GGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 16526 0.67 0.486744
Target:  5'- cGCCGCaGUCcugggGUGuGGCCUUCaucguuaugggccUGGGCGUCa -3'
miRNA:   3'- -UGGCG-CAG-----CAU-CCGGAAG-------------GUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 60344 0.67 0.477901
Target:  5'- cACCGCG-CGUucGGCCagcggugCCAGGUcgGUCa -3'
miRNA:   3'- -UGGCGCaGCAu-CCGGaa-----GGUCCG--CAG- -5'
18988 5' -59.2 NC_004684.1 + 32081 0.67 0.477901
Target:  5'- cACCGCGUC-UGGGUgagCguuggCCAGGCGg- -3'
miRNA:   3'- -UGGCGCAGcAUCCG---Gaa---GGUCCGCag -5'
18988 5' -59.2 NC_004684.1 + 25637 0.67 0.477901
Target:  5'- cACCGCGcCG-AGGCuCUUgagcaccgaCCcGGCGUCg -3'
miRNA:   3'- -UGGCGCaGCaUCCG-GAA---------GGuCCGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.