Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18989 | 3' | -59.3 | NC_004684.1 | + | 4507 | 0.71 | 0.295753 |
Target: 5'- cCCGcgcguuguuCCGGCGGcCAGGAcuUGCuGGCGc -3' miRNA: 3'- aGGU---------GGCCGCC-GUCCUauACGuCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 23674 | 0.76 | 0.12514 |
Target: 5'- aCCACCGGCGGCGGuGUucgcgcggcccgGCAGGCu -3' miRNA: 3'- aGGUGGCCGCCGUCcUAua----------CGUCCGc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 10476 | 0.66 | 0.524171 |
Target: 5'- -aCGCUGGCGGCcuGGUAcccgGCGGuGCGc -3' miRNA: 3'- agGUGGCCGCCGucCUAUa---CGUC-CGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 61711 | 0.68 | 0.417621 |
Target: 5'- uUCgACUGGCccaaguGCGuGGUGUGCGGGCGg -3' miRNA: 3'- -AGgUGGCCGc-----CGUcCUAUACGUCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 18431 | 0.7 | 0.325339 |
Target: 5'- gCCGCCGGuCGGCuccGGGGgcgGCAccGGCGu -3' miRNA: 3'- aGGUGGCC-GCCG---UCCUauaCGU--CCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 785 | 0.77 | 0.115697 |
Target: 5'- gUCCACCGGCGGCugaccucggggccgAGGAU---CAGGCGc -3' miRNA: 3'- -AGGUGGCCGCCG--------------UCCUAuacGUCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 13361 | 0.68 | 0.400571 |
Target: 5'- gCCACCGGCGGCcaccagcgcGCuGGCGg -3' miRNA: 3'- aGGUGGCCGCCGuccuaua--CGuCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 57674 | 0.78 | 0.093758 |
Target: 5'- aCCACCGuCGGUAGGu--UGCGGGCGa -3' miRNA: 3'- aGGUGGCcGCCGUCCuauACGUCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 9036 | 1.08 | 0.000612 |
Target: 5'- cUCCACCGGCGGCAGGAUAUGCAGGCGc -3' miRNA: 3'- -AGGUGGCCGCCGUCCUAUACGUCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 19354 | 0.71 | 0.274968 |
Target: 5'- cUCCGgcuCCGGCGGCAGGGcAUcgaaGCAGGa- -3' miRNA: 3'- -AGGU---GGCCGCCGUCCUaUA----CGUCCgc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 19410 | 0.69 | 0.357067 |
Target: 5'- gCCA-CGGCGGCGGcGUAUGC-GGCc -3' miRNA: 3'- aGGUgGCCGCCGUCcUAUACGuCCGc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 33124 | 0.66 | 0.55509 |
Target: 5'- -gCGCUugGGCgGGCGGGAUcAUGUuGGCGa -3' miRNA: 3'- agGUGG--CCG-CCGUCCUA-UACGuCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 6782 | 0.69 | 0.382252 |
Target: 5'- gCCGaCGGUGGcCAGGucgaccUGUGCAGGCc -3' miRNA: 3'- aGGUgGCCGCC-GUCCu-----AUACGUCCGc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 45283 | 0.68 | 0.445418 |
Target: 5'- gCCGCUGgagcGCGGCGGGG--UGguGGCc -3' miRNA: 3'- aGGUGGC----CGCCGUCCUauACguCCGc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 1955 | 0.66 | 0.514008 |
Target: 5'- aUCCuuCGGCcaGguGGAUAUGCGgcccGGCGu -3' miRNA: 3'- -AGGugGCCGc-CguCCUAUACGU----CCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 2784 | 0.66 | 0.53441 |
Target: 5'- -gCACCGGCcaGGCcGGggAUGCGGuGCc -3' miRNA: 3'- agGUGGCCG--CCGuCCuaUACGUC-CGc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 9931 | 0.71 | 0.281764 |
Target: 5'- cUCACCGGCGGCGGuGAUcgacgGCAagacGGUGg -3' miRNA: 3'- aGGUGGCCGCCGUC-CUAua---CGU----CCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 42709 | 0.76 | 0.133491 |
Target: 5'- aCCGgCGGCGGCGGGGgagGUGcCGGGuCGa -3' miRNA: 3'- aGGUgGCCGCCGUCCUa--UAC-GUCC-GC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 28649 | 0.74 | 0.193169 |
Target: 5'- -aCACCGGUGGCGGGGUGuUGguGaccGCGa -3' miRNA: 3'- agGUGGCCGCCGUCCUAU-ACguC---CGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 61169 | 0.68 | 0.42677 |
Target: 5'- gCCAcCCGGCcaggucGGCGGGGU-UGguGGCc -3' miRNA: 3'- aGGU-GGCCG------CCGUCCUAuACguCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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