miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 5' -58.7 NC_004684.1 + 57353 0.66 0.573155
Target:  5'- --gGCCGAgCUGUgCGGGCCGACgGu- -3'
miRNA:   3'- cagCGGCUaGACG-GUCCGGCUGgUua -5'
18989 5' -58.7 NC_004684.1 + 22372 0.66 0.573155
Target:  5'- -cCGCCGcgCggGCCuuGGCCGccGCCAGg -3'
miRNA:   3'- caGCGGCuaGa-CGGu-CCGGC--UGGUUa -5'
18989 5' -58.7 NC_004684.1 + 36365 0.66 0.573155
Target:  5'- -cCGCCucguUCUugGCCAGGCCG-CCGGa -3'
miRNA:   3'- caGCGGcu--AGA--CGGUCCGGCuGGUUa -5'
18989 5' -58.7 NC_004684.1 + 49432 0.66 0.573155
Target:  5'- --gGCCuGAUCccGUCAGcGCCGACCAu- -3'
miRNA:   3'- cagCGG-CUAGa-CGGUC-CGGCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 42856 0.66 0.562556
Target:  5'- -cCGCUcaaaccgggGAUCgcaccgGCCAGGCCG-CCAAc -3'
miRNA:   3'- caGCGG---------CUAGa-----CGGUCCGGCuGGUUa -5'
18989 5' -58.7 NC_004684.1 + 12851 0.66 0.562555
Target:  5'- gGUCGCgGAg--GCCgAGGCCG-CCAc- -3'
miRNA:   3'- -CAGCGgCUagaCGG-UCCGGCuGGUua -5'
18989 5' -58.7 NC_004684.1 + 21062 0.66 0.562555
Target:  5'- -gUGCCGGUgCUGaCCGGGCaccugGGCCGGUc -3'
miRNA:   3'- caGCGGCUA-GAC-GGUCCGg----CUGGUUA- -5'
18989 5' -58.7 NC_004684.1 + 51803 0.66 0.562555
Target:  5'- aGUC-CCGGUCcacgGCCAGGCCGcGCg--- -3'
miRNA:   3'- -CAGcGGCUAGa---CGGUCCGGC-UGguua -5'
18989 5' -58.7 NC_004684.1 + 50602 0.66 0.560442
Target:  5'- gGUCGgCGGUCggcgggucaucgGCguGGCCGACaCAGa -3'
miRNA:   3'- -CAGCgGCUAGa-----------CGguCCGGCUG-GUUa -5'
18989 5' -58.7 NC_004684.1 + 27999 0.66 0.55201
Target:  5'- uGUCGCCcagGAaCUcGCgCAGGCCgGGCCAAc -3'
miRNA:   3'- -CAGCGG---CUaGA-CG-GUCCGG-CUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 25189 0.66 0.55201
Target:  5'- gGUCGuuGAgcgacaugcCUGCCgggAGGUCGGCCAc- -3'
miRNA:   3'- -CAGCggCUa--------GACGG---UCCGGCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 64198 0.66 0.55201
Target:  5'- cGUUGCCGGUgUGCCGGaUCGACa--- -3'
miRNA:   3'- -CAGCGGCUAgACGGUCcGGCUGguua -5'
18989 5' -58.7 NC_004684.1 + 18332 0.66 0.541525
Target:  5'- -aCGCCGGUgCcGCCcccGGaGCCGACCGGc -3'
miRNA:   3'- caGCGGCUA-GaCGG---UC-CGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 31396 0.66 0.531107
Target:  5'- --gGCUGGUCUGCCcGGUC-ACCGAg -3'
miRNA:   3'- cagCGGCUAGACGGuCCGGcUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 28167 0.66 0.527996
Target:  5'- gGUCGCgCGG-CgGCCcggccacaccgccgGGGCCGACCAc- -3'
miRNA:   3'- -CAGCG-GCUaGaCGG--------------UCCGGCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 66748 0.66 0.520763
Target:  5'- -cCGCCGG--UGaCCGGGCCGccGCCGAg -3'
miRNA:   3'- caGCGGCUagAC-GGUCCGGC--UGGUUa -5'
18989 5' -58.7 NC_004684.1 + 1331 0.66 0.520763
Target:  5'- --gGCCGGg--GCCGGGCgacCGACCAGg -3'
miRNA:   3'- cagCGGCUagaCGGUCCG---GCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 814 0.67 0.514594
Target:  5'- uGUCGUCGGgguaguuggagcGCCAGGCCGuCCAc- -3'
miRNA:   3'- -CAGCGGCUaga---------CGGUCCGGCuGGUua -5'
18989 5' -58.7 NC_004684.1 + 41648 0.67 0.514594
Target:  5'- aUCGCCuccggugcggcguacGAag-GCCGGGCCGACCu-- -3'
miRNA:   3'- cAGCGG---------------CUagaCGGUCCGGCUGGuua -5'
18989 5' -58.7 NC_004684.1 + 22934 0.67 0.510498
Target:  5'- cUUGCUGGUCUugGCCAGcCCGGCCu-- -3'
miRNA:   3'- cAGCGGCUAGA--CGGUCcGGCUGGuua -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.