miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18990 3' -57.5 NC_004684.1 + 4898 0.66 0.673919
Target:  5'- gCUUGUccucgaucugcgCGCCGGUcaUGGCgucGcGCACCCc -3'
miRNA:   3'- -GAACA------------GCGGCCAc-ACCGa--CuCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 7709 0.66 0.673919
Target:  5'- --cGUCGCCGuGgcgcUGGCcgUGAGcCACCUg -3'
miRNA:   3'- gaaCAGCGGC-Cac--ACCG--ACUC-GUGGG- -5'
18990 3' -57.5 NC_004684.1 + 48957 0.66 0.673919
Target:  5'- --cGUCGgCGGgcgggGUGGCcgGGGCgggcgcgucgguGCCCu -3'
miRNA:   3'- gaaCAGCgGCCa----CACCGa-CUCG------------UGGG- -5'
18990 3' -57.5 NC_004684.1 + 53534 0.66 0.673919
Target:  5'- -gUGUCGUCGGUGcGGC---GUGCCUg -3'
miRNA:   3'- gaACAGCGGCCACaCCGacuCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 61323 0.66 0.663279
Target:  5'- -cUGUUcaaugGCgaGGUGUGGCUGAuCGCCg -3'
miRNA:   3'- gaACAG-----CGg-CCACACCGACUcGUGGg -5'
18990 3' -57.5 NC_004684.1 + 53546 0.66 0.663279
Target:  5'- --cGUUGCCGGUGcUGacacucGCgGGGgGCCCu -3'
miRNA:   3'- gaaCAGCGGCCAC-AC------CGaCUCgUGGG- -5'
18990 3' -57.5 NC_004684.1 + 49611 0.66 0.663279
Target:  5'- --cGUCguugcggcugGCCGGUGUccagcccagcGGCUccagGAGCACCg -3'
miRNA:   3'- gaaCAG----------CGGCCACA----------CCGA----CUCGUGGg -5'
18990 3' -57.5 NC_004684.1 + 51153 0.66 0.663279
Target:  5'- --cGcCGCCgacuccucGGUGUGGCcGAuGCGCCg -3'
miRNA:   3'- gaaCaGCGG--------CCACACCGaCU-CGUGGg -5'
18990 3' -57.5 NC_004684.1 + 11910 0.66 0.652612
Target:  5'- --aGUCGCCGGacaGcGGCgcgcucGCGCCCu -3'
miRNA:   3'- gaaCAGCGGCCa--CaCCGacu---CGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 47686 0.66 0.652612
Target:  5'- uCUUGUCGaaGGUGaugcUGGUUGgcgcGGUugCCa -3'
miRNA:   3'- -GAACAGCggCCAC----ACCGAC----UCGugGG- -5'
18990 3' -57.5 NC_004684.1 + 43758 0.66 0.652612
Target:  5'- --cGaCGCCGuGUG-GGCUGAGUuCCa -3'
miRNA:   3'- gaaCaGCGGC-CACaCCGACUCGuGGg -5'
18990 3' -57.5 NC_004684.1 + 26454 0.66 0.649408
Target:  5'- --cGUUGCCGGUgccguugcccgacgGaaUGGCcGAGCGCaCCg -3'
miRNA:   3'- gaaCAGCGGCCA--------------C--ACCGaCUCGUG-GG- -5'
18990 3' -57.5 NC_004684.1 + 42634 0.66 0.631234
Target:  5'- --cGcCGCCGGUGcUGGUgccgccagcgaUGAGCGCg- -3'
miRNA:   3'- gaaCaGCGGCCAC-ACCG-----------ACUCGUGgg -5'
18990 3' -57.5 NC_004684.1 + 57308 0.66 0.631234
Target:  5'- uUUGU--CCGGca-GGCUGAGCACCa -3'
miRNA:   3'- gAACAgcGGCCacaCCGACUCGUGGg -5'
18990 3' -57.5 NC_004684.1 + 5695 0.66 0.631234
Target:  5'- -cUGaCGCCGGUG-GaGCaGcGCGCCCu -3'
miRNA:   3'- gaACaGCGGCCACaC-CGaCuCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 58394 0.66 0.620542
Target:  5'- --cGUCGCCGGUGa-GCUGucauCACCa -3'
miRNA:   3'- gaaCAGCGGCCACacCGACuc--GUGGg -5'
18990 3' -57.5 NC_004684.1 + 52721 0.67 0.599194
Target:  5'- ----aUGCCGGUGaUGGC-GAcGUGCCCg -3'
miRNA:   3'- gaacaGCGGCCAC-ACCGaCU-CGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 1574 0.67 0.599194
Target:  5'- -aUGgugCGCCuGUcUGcGCUGAGCGCCa -3'
miRNA:   3'- gaACa--GCGGcCAcAC-CGACUCGUGGg -5'
18990 3' -57.5 NC_004684.1 + 815 0.67 0.599194
Target:  5'- -gUGUCGUCGGgGUaGUUgGAGCGCCa -3'
miRNA:   3'- gaACAGCGGCCaCAcCGA-CUCGUGGg -5'
18990 3' -57.5 NC_004684.1 + 17608 0.67 0.588556
Target:  5'- --cGUCGuCCGGcGUGGCaccGCGCUCg -3'
miRNA:   3'- gaaCAGC-GGCCaCACCGacuCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.