miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18992 5' -55 NC_004684.1 + 30817 0.65 0.817528
Target:  5'- -cGGACGGCGAUgCGaUGC-CCGCCa-- -3'
miRNA:   3'- gaUUUGCCGCUG-GC-ACGuGGUGGcuc -5'
18992 5' -55 NC_004684.1 + 35777 0.65 0.817528
Target:  5'- ---cAUGGUGACCG-GguCCGgCGAGa -3'
miRNA:   3'- gauuUGCCGCUGGCaCguGGUgGCUC- -5'
18992 5' -55 NC_004684.1 + 35854 0.65 0.817528
Target:  5'- ---cGCGGCGcgcGCUGggucUGCACCACCa-- -3'
miRNA:   3'- gauuUGCCGC---UGGC----ACGUGGUGGcuc -5'
18992 5' -55 NC_004684.1 + 34219 0.65 0.817528
Target:  5'- -gAGGCGGCGAggaaCGUG-ACCGCCa-- -3'
miRNA:   3'- gaUUUGCCGCUg---GCACgUGGUGGcuc -5'
18992 5' -55 NC_004684.1 + 60328 0.65 0.817528
Target:  5'- -----aGGUGGCCaccgccugcggGUGCACCuacaacGCCGAGg -3'
miRNA:   3'- gauuugCCGCUGG-----------CACGUGG------UGGCUC- -5'
18992 5' -55 NC_004684.1 + 2284 0.65 0.817528
Target:  5'- cCUcgGCGuaGUGGCCGUGCGgCACCu-- -3'
miRNA:   3'- -GAuuUGC--CGCUGGCACGUgGUGGcuc -5'
18992 5' -55 NC_004684.1 + 24930 0.65 0.814783
Target:  5'- gCUGGGCGGCGACCccgagaauuccucgGUGCcgACCcgGCCa-- -3'
miRNA:   3'- -GAUUUGCCGCUGG--------------CACG--UGG--UGGcuc -5'
18992 5' -55 NC_004684.1 + 14800 0.65 0.817529
Target:  5'- ---uACGGCGGCgCGcUGU-CCACCGGa -3'
miRNA:   3'- gauuUGCCGCUG-GC-ACGuGGUGGCUc -5'
18992 5' -55 NC_004684.1 + 25403 0.65 0.817529
Target:  5'- --cAGCGGCGGCCa-GUACCAauGGGg -3'
miRNA:   3'- gauUUGCCGCUGGcaCGUGGUggCUC- -5'
18992 5' -55 NC_004684.1 + 61263 0.65 0.814783
Target:  5'- ---cAUGGCGGCgGUgucgggauucgacaGCugCGCCGGGu -3'
miRNA:   3'- gauuUGCCGCUGgCA--------------CGugGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 63351 0.66 0.798913
Target:  5'- ----cCGGUGACCGcccaGCGC-ACCGAGc -3'
miRNA:   3'- gauuuGCCGCUGGCa---CGUGgUGGCUC- -5'
18992 5' -55 NC_004684.1 + 22146 0.66 0.798913
Target:  5'- ---cGCGGCauCCaugGCAUCACCGAGg -3'
miRNA:   3'- gauuUGCCGcuGGca-CGUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 11977 0.66 0.798913
Target:  5'- ---cACcGCGACCG-GCGgCACCGAc -3'
miRNA:   3'- gauuUGcCGCUGGCaCGUgGUGGCUc -5'
18992 5' -55 NC_004684.1 + 29794 0.66 0.789348
Target:  5'- ---uGCGGUacACCG-GCACCuACCGGGa -3'
miRNA:   3'- gauuUGCCGc-UGGCaCGUGG-UGGCUC- -5'
18992 5' -55 NC_004684.1 + 11666 0.66 0.779624
Target:  5'- ---cACGGCGGCCaacGUG-ACCGCCGc- -3'
miRNA:   3'- gauuUGCCGCUGG---CACgUGGUGGCuc -5'
18992 5' -55 NC_004684.1 + 29612 0.66 0.769753
Target:  5'- cCUAggcAGCGGCGugCagcUGCACCGCgaUGGGa -3'
miRNA:   3'- -GAU---UUGCCGCugGc--ACGUGGUG--GCUC- -5'
18992 5' -55 NC_004684.1 + 54039 0.66 0.779624
Target:  5'- ----gUGGCGGgUGUGC-CCGCCGuAGg -3'
miRNA:   3'- gauuuGCCGCUgGCACGuGGUGGC-UC- -5'
18992 5' -55 NC_004684.1 + 3624 0.66 0.80831
Target:  5'- ---cACGaGUGGCCGaagcGCGCCACCuGGGu -3'
miRNA:   3'- gauuUGC-CGCUGGCa---CGUGGUGG-CUC- -5'
18992 5' -55 NC_004684.1 + 53590 0.66 0.769753
Target:  5'- -cAGGCGGUcgGACaGUGCGCCGCUcuuGAGc -3'
miRNA:   3'- gaUUUGCCG--CUGgCACGUGGUGG---CUC- -5'
18992 5' -55 NC_004684.1 + 21317 0.66 0.80831
Target:  5'- -gAGGCGGUGGuCCG-GCGCgACCGc- -3'
miRNA:   3'- gaUUUGCCGCU-GGCaCGUGgUGGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.