miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18992 5' -55 NC_004684.1 + 12491 1.08 0.001648
Target:  5'- aCUAAACGGCGACCGUGCACCACCGAGc -3'
miRNA:   3'- -GAUUUGCCGCUGGCACGUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 57916 0.78 0.216796
Target:  5'- ----cCGGCGGCCa-GCACCGCCGGGa -3'
miRNA:   3'- gauuuGCCGCUGGcaCGUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 66745 0.77 0.234246
Target:  5'- ----cCGGUGACCGgGcCGCCGCCGAGg -3'
miRNA:   3'- gauuuGCCGCUGGCaC-GUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 20439 0.76 0.265269
Target:  5'- cCUGcGCGGUGACgGUGCACCgggcgacGCCGAu -3'
miRNA:   3'- -GAUuUGCCGCUGgCACGUGG-------UGGCUc -5'
18992 5' -55 NC_004684.1 + 12998 0.76 0.279552
Target:  5'- --cGACGGCGcACCG-GCACCGCUGGc -3'
miRNA:   3'- gauUUGCCGC-UGGCaCGUGGUGGCUc -5'
18992 5' -55 NC_004684.1 + 1152 0.76 0.279552
Target:  5'- -cGGGCGuGcCGACCGUGCACUuugguGCCGAGc -3'
miRNA:   3'- gaUUUGC-C-GCUGGCACGUGG-----UGGCUC- -5'
18992 5' -55 NC_004684.1 + 24839 0.75 0.286566
Target:  5'- -aGGGCGGCaGCgGUaGCGCCACCGGGc -3'
miRNA:   3'- gaUUUGCCGcUGgCA-CGUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 49190 0.75 0.316005
Target:  5'- --cGACGGCGACCuGUgGCACCuGCCGGu -3'
miRNA:   3'- gauUUGCCGCUGG-CA-CGUGG-UGGCUc -5'
18992 5' -55 NC_004684.1 + 15915 0.74 0.339544
Target:  5'- ----gUGGCGauGCCGcGCGCCACCGGGu -3'
miRNA:   3'- gauuuGCCGC--UGGCaCGUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 67068 0.74 0.35593
Target:  5'- -cAAGCugGGCGACUG-GCACC-CCGAGg -3'
miRNA:   3'- gaUUUG--CCGCUGGCaCGUGGuGGCUC- -5'
18992 5' -55 NC_004684.1 + 28162 0.74 0.35593
Target:  5'- ---cGCGGCGGcCCGgccaCACCGCCGGGg -3'
miRNA:   3'- gauuUGCCGCU-GGCac--GUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 28890 0.74 0.36433
Target:  5'- -cGAACGGCGcGCCGUGgcgacCGCCGCUGAu -3'
miRNA:   3'- gaUUUGCCGC-UGGCAC-----GUGGUGGCUc -5'
18992 5' -55 NC_004684.1 + 23522 0.74 0.372865
Target:  5'- -cAGAuCGGCcACCGUGCGCagCACCGGGa -3'
miRNA:   3'- gaUUU-GCCGcUGGCACGUG--GUGGCUC- -5'
18992 5' -55 NC_004684.1 + 40540 0.73 0.381535
Target:  5'- -cGAGCaGCGGCCGccuggGCACCGCUGAc -3'
miRNA:   3'- gaUUUGcCGCUGGCa----CGUGGUGGCUc -5'
18992 5' -55 NC_004684.1 + 3536 0.73 0.390338
Target:  5'- -gAGACGGCGAacaCCGUgGUGCCGCUGAc -3'
miRNA:   3'- gaUUUGCCGCU---GGCA-CGUGGUGGCUc -5'
18992 5' -55 NC_004684.1 + 65303 0.73 0.390339
Target:  5'- --cGACGGCGGCCucgcuGUGCACCACgGc- -3'
miRNA:   3'- gauUUGCCGCUGG-----CACGUGGUGgCuc -5'
18992 5' -55 NC_004684.1 + 33668 0.73 0.399274
Target:  5'- ---cAUGGCGucGCUGUGCACCACCa-- -3'
miRNA:   3'- gauuUGCCGC--UGGCACGUGGUGGcuc -5'
18992 5' -55 NC_004684.1 + 62160 0.73 0.399274
Target:  5'- ----cUGGCGACCGUGCAgCAgUGGGu -3'
miRNA:   3'- gauuuGCCGCUGGCACGUgGUgGCUC- -5'
18992 5' -55 NC_004684.1 + 60741 0.73 0.408339
Target:  5'- ----cCGGCGACCGgGUgGCCGCCGGGu -3'
miRNA:   3'- gauuuGCCGCUGGCaCG-UGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 48888 0.73 0.408339
Target:  5'- -aGAACGGCGGCCuguccUGCAUCAUCGGc -3'
miRNA:   3'- gaUUUGCCGCUGGc----ACGUGGUGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.