miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18992 5' -55 NC_004684.1 + 15590 0.7 0.568311
Target:  5'- -aAGGgGGCGcgcuCgGUGCGCUACCGGGu -3'
miRNA:   3'- gaUUUgCCGCu---GgCACGUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 51481 0.71 0.515777
Target:  5'- -aGGAUGGCGACCugcggaugGCACCGCCcGGu -3'
miRNA:   3'- gaUUUGCCGCUGGca------CGUGGUGGcUC- -5'
18992 5' -55 NC_004684.1 + 15784 0.71 0.525102
Target:  5'- --cGGCGGCGACaccggcaaCGUGCACaccaccaCGCCGAGc -3'
miRNA:   3'- gauUUGCCGCUG--------GCACGUG-------GUGGCUC- -5'
18992 5' -55 NC_004684.1 + 57907 0.71 0.526142
Target:  5'- gCUGAA-GGUGGCCGgGCugACCGCCGAu -3'
miRNA:   3'- -GAUUUgCCGCUGGCaCG--UGGUGGCUc -5'
18992 5' -55 NC_004684.1 + 9104 0.7 0.546044
Target:  5'- --uGACGcguuCGACCGUGgggccauCACCGCCGAGg -3'
miRNA:   3'- gauUUGCc---GCUGGCAC-------GUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 21614 0.7 0.547098
Target:  5'- --cGAgGGCGACCGccuggaggUGCGCCugccaACCGAGc -3'
miRNA:   3'- gauUUgCCGCUGGC--------ACGUGG-----UGGCUC- -5'
18992 5' -55 NC_004684.1 + 60075 0.7 0.547098
Target:  5'- ----cCGGCGGcCCGUGCGggccuUCACCGGGc -3'
miRNA:   3'- gauuuGCCGCU-GGCACGU-----GGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 32604 0.7 0.555556
Target:  5'- -aGAACGGCGugGCCGUacccgguGCggagugggacgacACCGCCGAGa -3'
miRNA:   3'- gaUUUGCCGC--UGGCA-------CG-------------UGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 35399 0.7 0.557676
Target:  5'- ----cUGGUGGCCGgaugaGCCGCCGAGg -3'
miRNA:   3'- gauuuGCCGCUGGCacg--UGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 30970 0.71 0.515777
Target:  5'- -gGAACGGCGuggUCG-GCACCGuuGAGa -3'
miRNA:   3'- gaUUUGCCGCu--GGCaCGUGGUggCUC- -5'
18992 5' -55 NC_004684.1 + 31824 0.72 0.475205
Target:  5'- aUGAAgGGCGACau--CGCCACCGGGg -3'
miRNA:   3'- gAUUUgCCGCUGgcacGUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 65793 0.72 0.46531
Target:  5'- ---cACGGCGACCGaUGCcgugCACCGGGc -3'
miRNA:   3'- gauuUGCCGCUGGC-ACGug--GUGGCUC- -5'
18992 5' -55 NC_004684.1 + 24839 0.75 0.286566
Target:  5'- -aGGGCGGCaGCgGUaGCGCCACCGGGc -3'
miRNA:   3'- gaUUUGCCGcUGgCA-CGUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 28890 0.74 0.36433
Target:  5'- -cGAACGGCGcGCCGUGgcgacCGCCGCUGAu -3'
miRNA:   3'- gaUUUGCCGC-UGGCAC-----GUGGUGGCUc -5'
18992 5' -55 NC_004684.1 + 65303 0.73 0.390339
Target:  5'- --cGACGGCGGCCucgcuGUGCACCACgGc- -3'
miRNA:   3'- gauUUGCCGCUGG-----CACGUGGUGgCuc -5'
18992 5' -55 NC_004684.1 + 33668 0.73 0.399274
Target:  5'- ---cAUGGCGucGCUGUGCACCACCa-- -3'
miRNA:   3'- gauuUGCCGC--UGGCACGUGGUGGcuc -5'
18992 5' -55 NC_004684.1 + 60741 0.73 0.408339
Target:  5'- ----cCGGCGACCGgGUgGCCGCCGGGu -3'
miRNA:   3'- gauuuGCCGCUGGCaCG-UGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 8621 0.73 0.417532
Target:  5'- ----cCGGUGcACCG-GCACCGCCGAu -3'
miRNA:   3'- gauuuGCCGC-UGGCaCGUGGUGGCUc -5'
18992 5' -55 NC_004684.1 + 56170 0.72 0.42685
Target:  5'- --cGACGGCGACgaCGgcgGCGCUAUCGAGc -3'
miRNA:   3'- gauUUGCCGCUG--GCa--CGUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 19761 0.72 0.436289
Target:  5'- cCUGcGCGGCcuGCCgGUGC-CCGCCGGGg -3'
miRNA:   3'- -GAUuUGCCGc-UGG-CACGuGGUGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.