miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18992 5' -55 NC_004684.1 + 758 0.69 0.632896
Target:  5'- --uGGCGGCGcucCUG-GaCACCGCCGAGg -3'
miRNA:   3'- gauUUGCCGCu--GGCaC-GUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 1152 0.76 0.279552
Target:  5'- -cGGGCGuGcCGACCGUGCACUuugguGCCGAGc -3'
miRNA:   3'- gaUUUGC-C-GCUGGCACGUGG-----UGGCUC- -5'
18992 5' -55 NC_004684.1 + 1335 0.7 0.536584
Target:  5'- uCUGGGCcggggccgGGCGACCGaccagGCCGCCGAGg -3'
miRNA:   3'- -GAUUUG--------CCGCUGGCacg--UGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 1730 0.67 0.759745
Target:  5'- ---uGCcGCGACCucacCACCACCGAGg -3'
miRNA:   3'- gauuUGcCGCUGGcac-GUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 2284 0.65 0.817528
Target:  5'- cCUcgGCGuaGUGGCCGUGCGgCACCu-- -3'
miRNA:   3'- -GAuuUGC--CGCUGGCACGUgGUGGcuc -5'
18992 5' -55 NC_004684.1 + 2822 0.67 0.760751
Target:  5'- -cGAACGuGUGGCCGUGCgguguggcgcacuuGCCcccggcaccggccagGCCGGGg -3'
miRNA:   3'- gaUUUGC-CGCUGGCACG--------------UGG---------------UGGCUC- -5'
18992 5' -55 NC_004684.1 + 3536 0.73 0.390338
Target:  5'- -gAGACGGCGAacaCCGUgGUGCCGCUGAc -3'
miRNA:   3'- gaUUUGCCGCU---GGCA-CGUGGUGGCUc -5'
18992 5' -55 NC_004684.1 + 3624 0.66 0.80831
Target:  5'- ---cACGaGUGGCCGaagcGCGCCACCuGGGu -3'
miRNA:   3'- gauuUGC-CGCUGGCa---CGUGGUGG-CUC- -5'
18992 5' -55 NC_004684.1 + 4043 0.67 0.729007
Target:  5'- --cGACGGUGGCCuaccgGcCAUCGCCGGGu -3'
miRNA:   3'- gauUUGCCGCUGGca---C-GUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 5922 0.7 0.578997
Target:  5'- -cGAcCGGCuGGCCGcGCugGCCACCGGGc -3'
miRNA:   3'- gaUUuGCCG-CUGGCaCG--UGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 6160 0.67 0.73833
Target:  5'- --cGGCGGCGGCCagcGUGCggcgguaGgCACCGGGc -3'
miRNA:   3'- gauUUGCCGCUGG---CACG-------UgGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 6346 0.71 0.495303
Target:  5'- -aGAugGGCGACgCGcacUGCAUCACCGu- -3'
miRNA:   3'- gaUUugCCGCUG-GC---ACGUGGUGGCuc -5'
18992 5' -55 NC_004684.1 + 6478 0.66 0.80831
Target:  5'- gCUGGGCGGCGGUgGUGUucgaCAUCGGGu -3'
miRNA:   3'- -GAUUUGCCGCUGgCACGug--GUGGCUC- -5'
18992 5' -55 NC_004684.1 + 8621 0.73 0.417532
Target:  5'- ----cCGGUGcACCG-GCACCGCCGAu -3'
miRNA:   3'- gauuuGCCGC-UGGCaCGUGGUGGCUc -5'
18992 5' -55 NC_004684.1 + 8706 0.66 0.797964
Target:  5'- --cGGCGGUGcCgGUGCACCGggcuuguUCGAGg -3'
miRNA:   3'- gauUUGCCGCuGgCACGUGGU-------GGCUC- -5'
18992 5' -55 NC_004684.1 + 9104 0.7 0.546044
Target:  5'- --uGACGcguuCGACCGUGgggccauCACCGCCGAGg -3'
miRNA:   3'- gauUUGCc---GCUGGCAC-------GUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 9906 0.68 0.673903
Target:  5'- -aAGACGGUGGCCuugagcgucggGUGCCACCGGc -3'
miRNA:   3'- gaUUUGCCGCUGGca---------CGUGGUGGCUc -5'
18992 5' -55 NC_004684.1 + 10595 0.71 0.515777
Target:  5'- cCUGAccguCGGCGGCCcaGUGCGuCgGCCGGGu -3'
miRNA:   3'- -GAUUu---GCCGCUGG--CACGU-GgUGGCUC- -5'
18992 5' -55 NC_004684.1 + 10817 0.67 0.749611
Target:  5'- ----cCGGCGGCUGgGC-CgCACCGAGu -3'
miRNA:   3'- gauuuGCCGCUGGCaCGuG-GUGGCUC- -5'
18992 5' -55 NC_004684.1 + 11666 0.66 0.779624
Target:  5'- ---cACGGCGGCCaacGUG-ACCGCCGc- -3'
miRNA:   3'- gauuUGCCGCUGG---CACgUGGUGGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.