miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18997 3' -55.9 NC_004684.1 + 36714 0.66 0.774842
Target:  5'- cGUCGCCGGGGguuaccgcaUCGACcuGUUcgccgucccgGCGCuGACGc -3'
miRNA:   3'- -CAGCGGCCCU---------AGCUG--CAA----------CGUG-CUGU- -5'
18997 3' -55.9 NC_004684.1 + 33659 0.66 0.773861
Target:  5'- cUCGCCGGGcaUGGCGUcgcugUGCACcaccaccgcgcugGACAc -3'
miRNA:   3'- cAGCGGCCCuaGCUGCA-----ACGUG-------------CUGU- -5'
18997 3' -55.9 NC_004684.1 + 60643 0.66 0.764967
Target:  5'- gGUCGaguucgaGGGuGUCGACGgcaccggGCGCGGCGa -3'
miRNA:   3'- -CAGCgg-----CCC-UAGCUGCaa-----CGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 60694 0.66 0.764967
Target:  5'- -gCGCCGGGugacCGGCcugcgcaccgUGCGCGGCGu -3'
miRNA:   3'- caGCGGCCCua--GCUGca--------ACGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 15063 0.66 0.764967
Target:  5'- -aCGCCGGaugaGGUCGACGgccuuaucgGCGCGGu- -3'
miRNA:   3'- caGCGGCC----CUAGCUGCaa-------CGUGCUgu -5'
18997 3' -55.9 NC_004684.1 + 42227 0.66 0.764967
Target:  5'- -cCGCCGGuGUCGGCaccgGCGCGAa- -3'
miRNA:   3'- caGCGGCCcUAGCUGcaa-CGUGCUgu -5'
18997 3' -55.9 NC_004684.1 + 52721 0.66 0.764967
Target:  5'- -aUGCCGGuGAUggCGACG-UGCcCGGCAc -3'
miRNA:   3'- caGCGGCC-CUA--GCUGCaACGuGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 56311 0.66 0.754961
Target:  5'- -gCGCCGGGA-CGugGagaccgcgcUGCGCGAg- -3'
miRNA:   3'- caGCGGCCCUaGCugCa--------ACGUGCUgu -5'
18997 3' -55.9 NC_004684.1 + 16276 0.66 0.754961
Target:  5'- -gCGCCGGGccCGACGcgGCGCuuCAc -3'
miRNA:   3'- caGCGGCCCuaGCUGCaaCGUGcuGU- -5'
18997 3' -55.9 NC_004684.1 + 16972 0.66 0.754961
Target:  5'- aUUGCuauuCGGGGgaauuaCGGCGUUGCugGGCc -3'
miRNA:   3'- cAGCG----GCCCUa-----GCUGCAACGugCUGu -5'
18997 3' -55.9 NC_004684.1 + 30962 0.66 0.754961
Target:  5'- cUCGCUGuGGAaCGGCG-UGguCGGCAc -3'
miRNA:   3'- cAGCGGC-CCUaGCUGCaACguGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 10425 0.66 0.744836
Target:  5'- -cCGgCGGGGUCGAUGgcggccUGCguuGCGGCGc -3'
miRNA:   3'- caGCgGCCCUAGCUGCa-----ACG---UGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 49404 0.66 0.744836
Target:  5'- -cCGCCGacGGGUCGAUccUGgACGGCAa -3'
miRNA:   3'- caGCGGC--CCUAGCUGcaACgUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 52465 0.66 0.734602
Target:  5'- -cCGCCuGGAUCGGCug-GgACGGCAc -3'
miRNA:   3'- caGCGGcCCUAGCUGcaaCgUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 22422 0.66 0.72427
Target:  5'- -cCGCUGGGccucaacgccAUCGcCGUcgGCGCGGCGg -3'
miRNA:   3'- caGCGGCCC----------UAGCuGCAa-CGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 9724 0.67 0.71385
Target:  5'- -aUGCCGGGAauguucauguUCaGCGccUGCACGGCGc -3'
miRNA:   3'- caGCGGCCCU----------AGcUGCa-ACGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 28144 0.67 0.71385
Target:  5'- -cCGCCGGGGcCGACcaccgGCAUGAUc -3'
miRNA:   3'- caGCGGCCCUaGCUGcaa--CGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 7392 0.67 0.703354
Target:  5'- aUgGCCGGGuucgCGugGUgcaGUGCGGCGa -3'
miRNA:   3'- cAgCGGCCCua--GCugCAa--CGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 29445 0.67 0.7023
Target:  5'- -cCGCUGGGcgaccgguucgacAUCGACcuggUGCGCGACc -3'
miRNA:   3'- caGCGGCCC-------------UAGCUGca--ACGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 29505 0.67 0.692792
Target:  5'- -gCGCacgauGGGGUCGACGUUG-AUGGCc -3'
miRNA:   3'- caGCGg----CCCUAGCUGCAACgUGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.