miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18997 5' -56.3 NC_004684.1 + 57253 0.66 0.709083
Target:  5'- --gGCgGgcGGCACCGUcGGCccGCACAg -3'
miRNA:   3'- aagCGgCuaCCGUGGCAaCUG--CGUGU- -5'
18997 5' -56.3 NC_004684.1 + 48943 0.66 0.709083
Target:  5'- gUCGCCGAacGGCA-CGUcGGCGgGCGg -3'
miRNA:   3'- aAGCGGCUa-CCGUgGCAaCUGCgUGU- -5'
18997 5' -56.3 NC_004684.1 + 48776 0.66 0.698404
Target:  5'- cUUGCCGAcgccgGGCggGCCGaUGAUGCAgGa -3'
miRNA:   3'- aAGCGGCUa----CCG--UGGCaACUGCGUgU- -5'
18997 5' -56.3 NC_004684.1 + 64241 0.66 0.698404
Target:  5'- cUCgGCCa--GGCGCUggguGUUGGCGCACAc -3'
miRNA:   3'- aAG-CGGcuaCCGUGG----CAACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 12881 0.66 0.698404
Target:  5'- gUCGgCGggGGUGCCGUUGuccuCGUugGc -3'
miRNA:   3'- aAGCgGCuaCCGUGGCAACu---GCGugU- -5'
18997 5' -56.3 NC_004684.1 + 15815 0.66 0.698404
Target:  5'- -aCGCCGA--GCGacCCGgUGGCGCGCGg -3'
miRNA:   3'- aaGCGGCUacCGU--GGCaACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 13637 0.66 0.698404
Target:  5'- --aGCCGAUGGcCGCCa--GGCGCAg- -3'
miRNA:   3'- aagCGGCUACC-GUGGcaaCUGCGUgu -5'
18997 5' -56.3 NC_004684.1 + 44915 0.66 0.687662
Target:  5'- -gCGUCGGUGcGCGCCGgguagucggUGGCGaCGCu -3'
miRNA:   3'- aaGCGGCUAC-CGUGGCa--------ACUGC-GUGu -5'
18997 5' -56.3 NC_004684.1 + 24493 0.66 0.687662
Target:  5'- -cCGCCGggGGCgguGCCGcagGGcCGCGCGu -3'
miRNA:   3'- aaGCGGCuaCCG---UGGCaa-CU-GCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 59549 0.66 0.687662
Target:  5'- -cCGCCagcGcGCGCCGUUGuCGCACc -3'
miRNA:   3'- aaGCGGcuaC-CGUGGCAACuGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 64422 0.66 0.687662
Target:  5'- -cCGCCGuccagGGCACCGaUGgucucgauguGCGCGCc -3'
miRNA:   3'- aaGCGGCua---CCGUGGCaAC----------UGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 30255 0.66 0.676868
Target:  5'- -cCGCCGAcGGCguugaucgcccACUGgccGACGCGCAc -3'
miRNA:   3'- aaGCGGCUaCCG-----------UGGCaa-CUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 19649 0.66 0.676868
Target:  5'- -aCGCCaGGcccggagaccUGGCACCGcccGGCGCACc -3'
miRNA:   3'- aaGCGG-CU----------ACCGUGGCaa-CUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 31654 0.66 0.666032
Target:  5'- -cCGCCGGgacgcUGGCACUGUcGGCgGUGCGg -3'
miRNA:   3'- aaGCGGCU-----ACCGUGGCAaCUG-CGUGU- -5'
18997 5' -56.3 NC_004684.1 + 8449 0.66 0.666032
Target:  5'- gUCGCCGGUgGGCAgcucgaugaUUGUuuucuucucgcUGGCGCGCAc -3'
miRNA:   3'- aAGCGGCUA-CCGU---------GGCA-----------ACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 38909 0.66 0.666032
Target:  5'- --gGCCGucgGGCACCGccaGGCGgGCAc -3'
miRNA:   3'- aagCGGCua-CCGUGGCaa-CUGCgUGU- -5'
18997 5' -56.3 NC_004684.1 + 49194 0.66 0.666032
Target:  5'- -aCGCCGAcGGCgACC--UGugGCACc -3'
miRNA:   3'- aaGCGGCUaCCG-UGGcaACugCGUGu -5'
18997 5' -56.3 NC_004684.1 + 53350 0.66 0.666032
Target:  5'- --aGCCGAUGaCACCGga-GCGCGCc -3'
miRNA:   3'- aagCGGCUACcGUGGCaacUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 8173 0.66 0.655166
Target:  5'- aUCGCCGggGGCgcGCUGggccaGGCGCAg- -3'
miRNA:   3'- aAGCGGCuaCCG--UGGCaa---CUGCGUgu -5'
18997 5' -56.3 NC_004684.1 + 15780 0.66 0.655166
Target:  5'- -aUGCCGGUGGCgucggugccGCCGcUGGC-CACGa -3'
miRNA:   3'- aaGCGGCUACCG---------UGGCaACUGcGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.