miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18999 5' -60.9 NC_004684.1 + 60611 0.66 0.433068
Target:  5'- aGGC-CGGUcaccCGGCGCAcGUCGcccauGCGCAg -3'
miRNA:   3'- -CCGaGCCGa---GCCGCGU-CAGU-----CGCGUg -5'
18999 5' -60.9 NC_004684.1 + 59818 0.66 0.470738
Target:  5'- cGCUCaGCaUGGCGCGGUgcCGGUGUAg -3'
miRNA:   3'- cCGAGcCGaGCCGCGUCA--GUCGCGUg -5'
18999 5' -60.9 NC_004684.1 + 25352 0.66 0.470738
Target:  5'- uGGcCUUGGCggCGGCcugauggaccCGGUCAGCGCcuACg -3'
miRNA:   3'- -CC-GAGCCGa-GCCGc---------GUCAGUCGCG--UG- -5'
18999 5' -60.9 NC_004684.1 + 43749 0.66 0.461161
Target:  5'- cGcCUCGGCUgacgguacCGGCGUGGUCAGgccggGUACg -3'
miRNA:   3'- cC-GAGCCGA--------GCCGCGUCAGUCg----CGUG- -5'
18999 5' -60.9 NC_004684.1 + 33871 0.66 0.470738
Target:  5'- cGUUCGGCcuaccaggCGGUGCGGgCGGUGC-Cg -3'
miRNA:   3'- cCGAGCCGa-------GCCGCGUCaGUCGCGuG- -5'
18999 5' -60.9 NC_004684.1 + 49668 0.66 0.461161
Target:  5'- uGGaCUCGGCccauUCGGCGauaaCGGUgucCAGgGCACc -3'
miRNA:   3'- -CC-GAGCCG----AGCCGC----GUCA---GUCgCGUG- -5'
18999 5' -60.9 NC_004684.1 + 63576 0.66 0.461161
Target:  5'- aGGUccaUCGGCcugcgCGGCGCGG-CGGUGguUa -3'
miRNA:   3'- -CCG---AGCCGa----GCCGCGUCaGUCGCguG- -5'
18999 5' -60.9 NC_004684.1 + 64362 0.66 0.461161
Target:  5'- ---cCGG-UCGGCGCGGUCAGCucCAUg -3'
miRNA:   3'- ccgaGCCgAGCCGCGUCAGUCGc-GUG- -5'
18999 5' -60.9 NC_004684.1 + 57137 0.66 0.436757
Target:  5'- uGGCgCGGCUgguucgccuccauggCGGCGguGgccgacGCGCACg -3'
miRNA:   3'- -CCGaGCCGA---------------GCCGCguCagu---CGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 12004 0.66 0.490188
Target:  5'- cGGCccUGGCugUCGGUGguG-CcGCGCACg -3'
miRNA:   3'- -CCGa-GCCG--AGCCGCguCaGuCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 36791 0.66 0.461161
Target:  5'- uGgUCGGCggCGGCuCGGUCAGC-UACg -3'
miRNA:   3'- cCgAGCCGa-GCCGcGUCAGUCGcGUG- -5'
18999 5' -60.9 NC_004684.1 + 2101 0.66 0.451689
Target:  5'- uGGCgcagcacuaCGGCgCGGCGUGGUCGgagcuggaccuGCGUGCg -3'
miRNA:   3'- -CCGa--------GCCGaGCCGCGUCAGU-----------CGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 44428 0.66 0.442323
Target:  5'- uGGCgucCGGCccggUGGCGUAGUCgaccAGCuugaGCACg -3'
miRNA:   3'- -CCGa--GCCGa---GCCGCGUCAG----UCG----CGUG- -5'
18999 5' -60.9 NC_004684.1 + 66492 0.66 0.436757
Target:  5'- cGGCUaGGcCUUGGCgGCGGccucgcgggccgccuUCAGCGCGg -3'
miRNA:   3'- -CCGAgCC-GAGCCG-CGUC---------------AGUCGCGUg -5'
18999 5' -60.9 NC_004684.1 + 65534 0.66 0.433068
Target:  5'- aGUUCGGUgugCaGCGCGGU-GGCGUACc -3'
miRNA:   3'- cCGAGCCGa--GcCGCGUCAgUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 49748 0.66 0.442323
Target:  5'- cGCUCGGCaCGgaGCGCAc-CAGCGCGg -3'
miRNA:   3'- cCGAGCCGaGC--CGCGUcaGUCGCGUg -5'
18999 5' -60.9 NC_004684.1 + 43792 0.66 0.461161
Target:  5'- uGCUUGGCguucuuaCGGUGguGgCGcGCGCGCa -3'
miRNA:   3'- cCGAGCCGa------GCCGCguCaGU-CGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 23719 0.66 0.451689
Target:  5'- cGGCggCGcGCUcaacaucgcuggCGGCGCAcugcUCGGUGCGCa -3'
miRNA:   3'- -CCGa-GC-CGA------------GCCGCGUc---AGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 20322 0.66 0.461161
Target:  5'- cGGCggCGGCcaucgagaUCGGCGUcGccCGGUGCACc -3'
miRNA:   3'- -CCGa-GCCG--------AGCCGCGuCa-GUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 59632 0.66 0.451689
Target:  5'- cGGUggGGgUCGGCcCGGUCAggucccccauGCGCGCc -3'
miRNA:   3'- -CCGagCCgAGCCGcGUCAGU----------CGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.