Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18999 | 5' | -60.9 | NC_004684.1 | + | 58808 | 0.69 | 0.293949 |
Target: 5'- cGGCgguaGGUgccgccUCGGauguccgggaugaUGCGGUCGGCGCACa -3' miRNA: 3'- -CCGag--CCG------AGCC-------------GCGUCAGUCGCGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 46846 | 0.72 | 0.203345 |
Target: 5'- cGCUCaGCUgCGGCGUAGUaaccGCGCAUg -3' miRNA: 3'- cCGAGcCGA-GCCGCGUCAgu--CGCGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 9193 | 0.72 | 0.20858 |
Target: 5'- cGGaa-GGUUgGGCGCAGUgGGCGCGu -3' miRNA: 3'- -CCgagCCGAgCCGCGUCAgUCGCGUg -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 66899 | 0.71 | 0.230694 |
Target: 5'- cGGCgCGGCcuUCGGCGCGGccuuggCGGC-CACa -3' miRNA: 3'- -CCGaGCCG--AGCCGCGUCa-----GUCGcGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 60214 | 0.71 | 0.242476 |
Target: 5'- cGGCgUUGGcCUCGGCGUuGUaGGUGCACc -3' miRNA: 3'- -CCG-AGCC-GAGCCGCGuCAgUCGCGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 22349 | 0.7 | 0.261082 |
Target: 5'- aGGCgguggCGGCggCGGCgGCGGUC-GCGCugGCg -3' miRNA: 3'- -CCGa----GCCGa-GCCG-CGUCAGuCGCG--UG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 50767 | 0.7 | 0.274122 |
Target: 5'- cGCccaUCGGUgucccaugUCcGCGCGGUCGGUGCGCa -3' miRNA: 3'- cCG---AGCCG--------AGcCGCGUCAGUCGCGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 33812 | 0.7 | 0.280835 |
Target: 5'- cGGUUCGGCgUCGGCG-GG-CGGUGUGCc -3' miRNA: 3'- -CCGAGCCG-AGCCGCgUCaGUCGCGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 41585 | 0.69 | 0.287678 |
Target: 5'- cGGCggCGGCauuuccUGGCGCAgGUCGGC-CACg -3' miRNA: 3'- -CCGa-GCCGa-----GCCGCGU-CAGUCGcGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 47200 | 0.72 | 0.183532 |
Target: 5'- cGGCgaaCGGUgCGGCGguGguagguaugcaUCAGCGCACc -3' miRNA: 3'- -CCGa--GCCGaGCCGCguC-----------AGUCGCGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 25541 | 0.73 | 0.169811 |
Target: 5'- cGGgUCGGUgcucaagagccUCGGCGCGGUggaaGGUGCGCu -3' miRNA: 3'- -CCgAGCCG-----------AGCCGCGUCAg---UCGCGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 18156 | 0.73 | 0.169811 |
Target: 5'- cGCUCGGCaacaucgaaaUCGGCGC-GUCGGUGUccACg -3' miRNA: 3'- cCGAGCCG----------AGCCGCGuCAGUCGCG--UG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 64636 | 0.75 | 0.120118 |
Target: 5'- uGCcgUCGGCgucgUGGCGCAccgcgauGUCGGCGCGCa -3' miRNA: 3'- cCG--AGCCGa---GCCGCGU-------CAGUCGCGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 64237 | 0.75 | 0.127057 |
Target: 5'- uGGcCUCGGC-CaGGCGCuggguGUUGGCGCACa -3' miRNA: 3'- -CC-GAGCCGaG-CCGCGu----CAGUCGCGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 39035 | 0.74 | 0.141311 |
Target: 5'- ---aCGGCUCGGCGguGUCcauuGUGCGCc -3' miRNA: 3'- ccgaGCCGAGCCGCguCAGu---CGCGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 49715 | 0.74 | 0.141311 |
Target: 5'- cGCUCGGCggcgCGGCGUucaaacUCAGCgGCACg -3' miRNA: 3'- cCGAGCCGa---GCCGCGuc----AGUCG-CGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 10589 | 0.74 | 0.148974 |
Target: 5'- cGGCU-GGUUCGGCGCGcgaGGUGCGCa -3' miRNA: 3'- -CCGAgCCGAGCCGCGUcagUCGCGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 46681 | 0.74 | 0.152947 |
Target: 5'- uGGCguugCGGUggCGGUGCGGU-GGCGCGCc -3' miRNA: 3'- -CCGa---GCCGa-GCCGCGUCAgUCGCGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 64541 | 0.73 | 0.16118 |
Target: 5'- cGGCUCGGCggccUUGGUGaccgGGUUGGUGCGCa -3' miRNA: 3'- -CCGAGCCG----AGCCGCg---UCAGUCGCGUG- -5' |
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18999 | 5' | -60.9 | NC_004684.1 | + | 53006 | 0.73 | 0.165445 |
Target: 5'- cGGCgaCGGCcCGGUGUcggucagccAGUCGGCGUACa -3' miRNA: 3'- -CCGa-GCCGaGCCGCG---------UCAGUCGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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