miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18999 5' -60.9 NC_004684.1 + 468 0.68 0.339252
Target:  5'- gGGCcgUCGGuCUCGGCcaGGUC-GCGCAUg -3'
miRNA:   3'- -CCG--AGCC-GAGCCGcgUCAGuCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 823 0.67 0.414903
Target:  5'- gGGCgUCGGUgucgUCGGgGUAGUUggAGCGC-Ca -3'
miRNA:   3'- -CCG-AGCCG----AGCCgCGUCAG--UCGCGuG- -5'
18999 5' -60.9 NC_004684.1 + 1670 0.71 0.230694
Target:  5'- cGCUgGcGCUCaGCGCAGacaGGCGCACc -3'
miRNA:   3'- cCGAgC-CGAGcCGCGUCag-UCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 2101 0.66 0.451689
Target:  5'- uGGCgcagcacuaCGGCgCGGCGUGGUCGgagcuggaccuGCGUGCg -3'
miRNA:   3'- -CCGa--------GCCGaGCCGCGUCAGU-----------CGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 2107 0.67 0.380015
Target:  5'- uGGCcUGGUcaacgUCGGgGCGGUCcAGCGCcCa -3'
miRNA:   3'- -CCGaGCCG-----AGCCgCGUCAG-UCGCGuG- -5'
18999 5' -60.9 NC_004684.1 + 3819 0.66 0.442323
Target:  5'- aGGaUCuGCUgGGCGCGuUCGGCGUGCc -3'
miRNA:   3'- -CCgAGcCGAgCCGCGUcAGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 3959 0.67 0.388551
Target:  5'- aGGcCUUGGCaCuGCGCAG-CGGCGUGCc -3'
miRNA:   3'- -CC-GAGCCGaGcCGCGUCaGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 4579 0.66 0.489207
Target:  5'- aGCUCGGCgggguuaCGGUaGCGGcCAacgacggccucgcGCGCACg -3'
miRNA:   3'- cCGAGCCGa------GCCG-CGUCaGU-------------CGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 5809 0.7 0.267538
Target:  5'- uGGCgaaCGGCaucugCGGCGC-GagGGCGCGCu -3'
miRNA:   3'- -CCGa--GCCGa----GCCGCGuCagUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 5875 0.67 0.423927
Target:  5'- -cCUCGcacGCcUGGCGCAG-UAGCGCGCu -3'
miRNA:   3'- ccGAGC---CGaGCCGCGUCaGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 5995 0.68 0.355169
Target:  5'- cGGCcUGGCUCaGGCGCAccaUCGGaCGCGg -3'
miRNA:   3'- -CCGaGCCGAG-CCGCGUc--AGUC-GCGUg -5'
18999 5' -60.9 NC_004684.1 + 6055 0.68 0.33149
Target:  5'- cGCUCGGC-CGGuCGCucacCGGCGCGg -3'
miRNA:   3'- cCGAGCCGaGCC-GCGuca-GUCGCGUg -5'
18999 5' -60.9 NC_004684.1 + 6159 0.69 0.293949
Target:  5'- cGGCaUCGGCUaccagcgCGGCGUgguuGGUCAGCugggccgcgagGCGCu -3'
miRNA:   3'- -CCG-AGCCGA-------GCCGCG----UCAGUCG-----------CGUG- -5'
18999 5' -60.9 NC_004684.1 + 7331 0.66 0.480415
Target:  5'- uGGCguagCGgauuuGCUCGGCGguGgCAGUGUAg -3'
miRNA:   3'- -CCGa---GC-----CGAGCCGCguCaGUCGCGUg -5'
18999 5' -60.9 NC_004684.1 + 7540 0.68 0.33149
Target:  5'- uGCUCGGUccuccagccagUCGGCGaaacgGGUCAGUGCc- -3'
miRNA:   3'- cCGAGCCG-----------AGCCGCg----UCAGUCGCGug -5'
18999 5' -60.9 NC_004684.1 + 8725 0.67 0.380015
Target:  5'- cGGCgggGGUgccgaggaUCGGCGguGcCGGUGCACc -3'
miRNA:   3'- -CCGag-CCG--------AGCCGCguCaGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 9193 0.72 0.20858
Target:  5'- cGGaa-GGUUgGGCGCAGUgGGCGCGu -3'
miRNA:   3'- -CCgagCCGAgCCGCGUCAgUCGCGUg -5'
18999 5' -60.9 NC_004684.1 + 10132 0.71 0.236524
Target:  5'- cGGCUCacGCgUGGCGaugaugcgcuccCGGUCGGCGCGCg -3'
miRNA:   3'- -CCGAGc-CGaGCCGC------------GUCAGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 10508 0.67 0.397213
Target:  5'- -aCUgGGC-CGcCGaCGGUCAGCGCGCa -3'
miRNA:   3'- ccGAgCCGaGCcGC-GUCAGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 10589 0.74 0.148974
Target:  5'- cGGCU-GGUUCGGCGCGcgaGGUGCGCa -3'
miRNA:   3'- -CCGAgCCGAGCCGCGUcagUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.