miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18999 5' -60.9 NC_004684.1 + 15037 1.11 0.000225
Target:  5'- cGGCUCGGCUCGGCGCAGUCAGCGCACa -3'
miRNA:   3'- -CCGAGCCGAGCCGCGUCAGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 51623 0.75 0.117253
Target:  5'- uGGC-CGcGCUCGGCGCAccuuUCGGUGUACg -3'
miRNA:   3'- -CCGaGC-CGAGCCGCGUc---AGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 64636 0.75 0.120118
Target:  5'- uGCcgUCGGCgucgUGGCGCAccgcgauGUCGGCGCGCa -3'
miRNA:   3'- cCG--AGCCGa---GCCGCGU-------CAGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 64237 0.75 0.127057
Target:  5'- uGGcCUCGGC-CaGGCGCuggguGUUGGCGCACa -3'
miRNA:   3'- -CC-GAGCCGaG-CCGCGu----CAGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 39035 0.74 0.141311
Target:  5'- ---aCGGCUCGGCGguGUCcauuGUGCGCc -3'
miRNA:   3'- ccgaGCCGAGCCGCguCAGu---CGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 49715 0.74 0.141311
Target:  5'- cGCUCGGCggcgCGGCGUucaaacUCAGCgGCACg -3'
miRNA:   3'- cCGAGCCGa---GCCGCGuc----AGUCG-CGUG- -5'
18999 5' -60.9 NC_004684.1 + 57655 0.74 0.148974
Target:  5'- gGGCgaugUCGGCcaacCGGCGCAGcUCGGCGguCg -3'
miRNA:   3'- -CCG----AGCCGa---GCCGCGUC-AGUCGCguG- -5'
18999 5' -60.9 NC_004684.1 + 48749 0.74 0.148974
Target:  5'- cGGUgaaGGCcucucCGGCGCGGUgCAGCGCAUc -3'
miRNA:   3'- -CCGag-CCGa----GCCGCGUCA-GUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 10589 0.74 0.148974
Target:  5'- cGGCU-GGUUCGGCGCGcgaGGUGCGCa -3'
miRNA:   3'- -CCGAgCCGAGCCGCGUcagUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 46681 0.74 0.152947
Target:  5'- uGGCguugCGGUggCGGUGCGGU-GGCGCGCc -3'
miRNA:   3'- -CCGa---GCCGa-GCCGCGUCAgUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 64541 0.73 0.16118
Target:  5'- cGGCUCGGCggccUUGGUGaccgGGUUGGUGCGCa -3'
miRNA:   3'- -CCGAGCCG----AGCCGCg---UCAGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 53006 0.73 0.165445
Target:  5'- cGGCgaCGGCcCGGUGUcggucagccAGUCGGCGUACa -3'
miRNA:   3'- -CCGa-GCCGaGCCGCG---------UCAGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 25541 0.73 0.169811
Target:  5'- cGGgUCGGUgcucaagagccUCGGCGCGGUggaaGGUGCGCu -3'
miRNA:   3'- -CCgAGCCG-----------AGCCGCGUCAg---UCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 18156 0.73 0.169811
Target:  5'- cGCUCGGCaacaucgaaaUCGGCGC-GUCGGUGUccACg -3'
miRNA:   3'- cCGAGCCG----------AGCCGCGuCAGUCGCG--UG- -5'
18999 5' -60.9 NC_004684.1 + 47200 0.72 0.183532
Target:  5'- cGGCgaaCGGUgCGGCGguGguagguaugcaUCAGCGCACc -3'
miRNA:   3'- -CCGa--GCCGaGCCGCguC-----------AGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 11697 0.72 0.188319
Target:  5'- cGGC-CaGCUCGGUGCcGUCguccaGGCGCACc -3'
miRNA:   3'- -CCGaGcCGAGCCGCGuCAG-----UCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 46846 0.72 0.203345
Target:  5'- cGCUCaGCUgCGGCGUAGUaaccGCGCAUg -3'
miRNA:   3'- cCGAGcCGA-GCCGCGUCAgu--CGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 9193 0.72 0.20858
Target:  5'- cGGaa-GGUUgGGCGCAGUgGGCGCGu -3'
miRNA:   3'- -CCgagCCGAgCCGCGUCAgUCGCGUg -5'
18999 5' -60.9 NC_004684.1 + 29721 0.71 0.219399
Target:  5'- cGGUUUGGCUCccauCGCGGUgCAGCuGCACg -3'
miRNA:   3'- -CCGAGCCGAGcc--GCGUCA-GUCG-CGUG- -5'
18999 5' -60.9 NC_004684.1 + 66899 0.71 0.230694
Target:  5'- cGGCgCGGCcuUCGGCGCGGccuuggCGGC-CACa -3'
miRNA:   3'- -CCGaGCCG--AGCCGCGUCa-----GUCGcGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.