Results 1 - 20 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19001 | 3' | -63.1 | NC_004684.1 | + | 15616 | 1.1 | 0.000222 |
Target: 5'- gCGGAUCAGCGCCUCCAGCGCCCGGCCc -3' miRNA: 3'- -GCCUAGUCGCGGAGGUCGCGGGCCGG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 19431 | 0.88 | 0.00936 |
Target: 5'- uGGAUCAGCGCCUCC--CGCUCGGCCa -3' miRNA: 3'- gCCUAGUCGCGGAGGucGCGGGCCGG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 40218 | 0.8 | 0.041653 |
Target: 5'- cCGaGGUCGGUGCCgaggccgCCAGCGCCCgcuacGGCCa -3' miRNA: 3'- -GC-CUAGUCGCGGa------GGUCGCGGG-----CCGG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 64341 | 0.8 | 0.040529 |
Target: 5'- gGuGGUguGCGCCaacacCCAGCGCCUGGCCg -3' miRNA: 3'- gC-CUAguCGCGGa----GGUCGCGGGCCGG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 5986 | 0.79 | 0.052384 |
Target: 5'- gCGcGAUCAGCGCCgccgCCAcccggucaggcugguGCuGCCCGGCCu -3' miRNA: 3'- -GC-CUAGUCGCGGa---GGU---------------CG-CGGGCCGG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 60296 | 0.78 | 0.059355 |
Target: 5'- cCGGuccUCGGCgGCCUCCAGgGCCuCGGCa -3' miRNA: 3'- -GCCu--AGUCG-CGGAGGUCgCGG-GCCGg -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 7513 | 0.76 | 0.081797 |
Target: 5'- aCGGGUCAGUGCCUgguagcgCCAGCGCCgGaaCCg -3' miRNA: 3'- -GCCUAGUCGCGGA-------GGUCGCGGgCc-GG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 37954 | 0.75 | 0.088863 |
Target: 5'- aCGGAUCGuGCGCCaaUGGUGCgCGGCCa -3' miRNA: 3'- -GCCUAGU-CGCGGagGUCGCGgGCCGG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 50271 | 0.75 | 0.093725 |
Target: 5'- gGGGUCGuCGCUggCCAGCGCCaGGCCc -3' miRNA: 3'- gCCUAGUcGCGGa-GGUCGCGGgCCGG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 26410 | 0.75 | 0.093725 |
Target: 5'- uCGGcaAUCGGCGgC-CCGGCgGCCUGGCCg -3' miRNA: 3'- -GCC--UAGUCGCgGaGGUCG-CGGGCCGG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 1227 | 0.74 | 0.115803 |
Target: 5'- uCGGccUCGGCgGCCUggUCGGuCGCCCGGCCc -3' miRNA: 3'- -GCCu-AGUCG-CGGA--GGUC-GCGGGCCGG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 2102 | 0.74 | 0.118882 |
Target: 5'- uGGucaacGUCGGgGCggUCCAGCGCCCaGGCCa -3' miRNA: 3'- gCC-----UAGUCgCGg-AGGUCGCGGG-CCGG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 50027 | 0.73 | 0.131977 |
Target: 5'- uCGGcggCAGCGUggCCGGUGCCUGGCUc -3' miRNA: 3'- -GCCua-GUCGCGgaGGUCGCGGGCCGG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 25295 | 0.73 | 0.135452 |
Target: 5'- cCGGugaAGCcacCCggugCCAGCGCCUGGCCa -3' miRNA: 3'- -GCCuagUCGc--GGa---GGUCGCGGGCCGG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 29438 | 0.73 | 0.131977 |
Target: 5'- aCGGA-CAGguccacCGCCUcCCAGCGCuuGGUCa -3' miRNA: 3'- -GCCUaGUC------GCGGA-GGUCGCGggCCGG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 9570 | 0.73 | 0.142289 |
Target: 5'- cCGGGUaCGGCuGCgcuugcccgccagCUCCAGCGCCCGGaacaCCa -3' miRNA: 3'- -GCCUA-GUCG-CG-------------GAGGUCGCGGGCC----GG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 56181 | 0.72 | 0.162225 |
Target: 5'- aCGG--CGGCGCUaUCgAGCGCCCGGUg -3' miRNA: 3'- -GCCuaGUCGCGG-AGgUCGCGGGCCGg -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 54258 | 0.72 | 0.166418 |
Target: 5'- cCGGGaCAGCuCCUcagCCAGCGCCgccaccCGGCCg -3' miRNA: 3'- -GCCUaGUCGcGGA---GGUCGCGG------GCCGG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 8711 | 0.72 | 0.154123 |
Target: 5'- aGGAUCGGCGgUgCCGGUGCaCCGGgCu -3' miRNA: 3'- gCCUAGUCGCgGaGGUCGCG-GGCCgG- -5' |
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19001 | 3' | -63.1 | NC_004684.1 | + | 39883 | 0.72 | 0.166418 |
Target: 5'- uGGAcCGGCGCagcuaCCAGCGCaucgagaaCGGCCa -3' miRNA: 3'- gCCUaGUCGCGga---GGUCGCGg-------GCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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