Results 1 - 20 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19002 | 5' | -52.5 | NC_004684.1 | + | 59168 | 0.66 | 0.903423 |
Target: 5'- uGGUGCcugcgaagGUGAGCAgguaGCGCuCGCC-GUCg -3' miRNA: 3'- gCCACGa-------CAUUUGU----UGUG-GCGGaCGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 57927 | 0.66 | 0.874096 |
Target: 5'- uCGG-GCggGUAccGGCGgccaGCACCGCCgggaccagGCCg -3' miRNA: 3'- -GCCaCGa-CAU--UUGU----UGUGGCGGa-------CGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 49775 | 0.66 | 0.874096 |
Target: 5'- cCGGUGCccUGGACAccguUAUCGCCgaauggGCCg -3' miRNA: 3'- -GCCACGacAUUUGUu---GUGGCGGa-----CGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 12381 | 0.66 | 0.889289 |
Target: 5'- gCGGUGUUGUGucuGCGcucggugguGCACgGUC-GCCg -3' miRNA: 3'- -GCCACGACAUu--UGU---------UGUGgCGGaCGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 52273 | 0.66 | 0.896491 |
Target: 5'- uGGcGUUGUGGA--ACACCaGCUUGCUg -3' miRNA: 3'- gCCaCGACAUUUguUGUGG-CGGACGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 16111 | 0.66 | 0.903423 |
Target: 5'- uCGGaGCUG--GACGccuACGCCGCCaGCa -3' miRNA: 3'- -GCCaCGACauUUGU---UGUGGCGGaCGg -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 47331 | 0.66 | 0.896491 |
Target: 5'- cCGGUGUgggcGUcGAGCAugGCCaCCagGCCa -3' miRNA: 3'- -GCCACGa---CA-UUUGUugUGGcGGa-CGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 36359 | 0.66 | 0.903423 |
Target: 5'- uGGUGUccaacGaAGGCAACGCCGUCUaCCu -3' miRNA: 3'- gCCACGa----CaUUUGUUGUGGCGGAcGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 26964 | 0.66 | 0.874096 |
Target: 5'- ---gGCgGUGGcCAACGCCGCCauccagGCCg -3' miRNA: 3'- gccaCGaCAUUuGUUGUGGCGGa-----CGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 33526 | 0.66 | 0.889289 |
Target: 5'- gCGGcuaUGCgggGUcguACGGCACCGuCCUGUUg -3' miRNA: 3'- -GCC---ACGa--CAuu-UGUUGUGGC-GGACGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 2616 | 0.66 | 0.903423 |
Target: 5'- aGGUGC-----GCAGCGuCCGCagUGCCg -3' miRNA: 3'- gCCACGacauuUGUUGU-GGCGg-ACGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 25319 | 0.66 | 0.874096 |
Target: 5'- gCGGUGUUGUucGCGu--CCaGCgUGCCg -3' miRNA: 3'- -GCCACGACAuuUGUuguGG-CGgACGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 41433 | 0.66 | 0.889289 |
Target: 5'- gCGGUGgUGc-GGCggUGCCGCCggUGUCa -3' miRNA: 3'- -GCCACgACauUUGuuGUGGCGG--ACGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 61066 | 0.66 | 0.873309 |
Target: 5'- aCGG-GCcgGUGGcggcauugucuccGCAACGCCGCCaccgGUCg -3' miRNA: 3'- -GCCaCGa-CAUU-------------UGUUGUGGCGGa---CGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 39178 | 0.66 | 0.874096 |
Target: 5'- gGGUGC-GUAGGCAcCACCgGCCU-UCa -3' miRNA: 3'- gCCACGaCAUUUGUuGUGG-CGGAcGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 16414 | 0.66 | 0.896491 |
Target: 5'- aCGGUGCUGUu--CggUcuGCUGCC-GCUc -3' miRNA: 3'- -GCCACGACAuuuGuuG--UGGCGGaCGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 5701 | 0.66 | 0.881061 |
Target: 5'- cCGGUGgaGc-AGCGcgcccucGCGCCGCagaUGCCg -3' miRNA: 3'- -GCCACgaCauUUGU-------UGUGGCGg--ACGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 62292 | 0.66 | 0.874096 |
Target: 5'- aGGcGCUGcuc-CAGCGCCGCgCggGCCu -3' miRNA: 3'- gCCaCGACauuuGUUGUGGCG-Ga-CGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 29230 | 0.66 | 0.877217 |
Target: 5'- aGGacaUGCUGUGGcGCGGCcccauucaaggcaucACCGCCgaccGCCg -3' miRNA: 3'- gCC---ACGACAUU-UGUUG---------------UGGCGGa---CGG- -5' |
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19002 | 5' | -52.5 | NC_004684.1 | + | 8621 | 0.66 | 0.896491 |
Target: 5'- cCGGUGCac----CGGCACCGCCgauCCu -3' miRNA: 3'- -GCCACGacauuuGUUGUGGCGGac-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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