miRNA display CGI


Results 1 - 20 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19002 5' -52.5 NC_004684.1 + 63818 0.7 0.677442
Target:  5'- uGGUGCUgGUGAuggugcggauggcGCGGCGCaCGCUgucggUGCCa -3'
miRNA:   3'- gCCACGA-CAUU-------------UGUUGUG-GCGG-----ACGG- -5'
19002 5' -52.5 NC_004684.1 + 2712 0.72 0.579172
Target:  5'- cCGGUGCcGggGGCAagugcgccACACCGCacgGCCa -3'
miRNA:   3'- -GCCACGaCauUUGU--------UGUGGCGga-CGG- -5'
19002 5' -52.5 NC_004684.1 + 27512 0.72 0.589058
Target:  5'- gCGGgccagagGCUGgcAAgGACgugcgcaGCCGCCUGCUg -3'
miRNA:   3'- -GCCa------CGACauUUgUUG-------UGGCGGACGG- -5'
19002 5' -52.5 NC_004684.1 + 22623 0.72 0.590158
Target:  5'- aCGGcGCUGUGG--GAgGCCGCC-GCCa -3'
miRNA:   3'- -GCCaCGACAUUugUUgUGGCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 23939 0.72 0.590158
Target:  5'- cCGGaGCUGc--GCgGAC-CCGCCUGCCg -3'
miRNA:   3'- -GCCaCGACauuUG-UUGuGGCGGACGG- -5'
19002 5' -52.5 NC_004684.1 + 40449 0.71 0.612229
Target:  5'- gCGGUGCcc-AGGCG--GCCGCCUGCUc -3'
miRNA:   3'- -GCCACGacaUUUGUugUGGCGGACGG- -5'
19002 5' -52.5 NC_004684.1 + 11598 0.71 0.634369
Target:  5'- cCGGUGCgccUGGACGACggcaccgagcugGCCGUCgGCCg -3'
miRNA:   3'- -GCCACGac-AUUUGUUG------------UGGCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 24160 0.71 0.645441
Target:  5'- cCGGUGCaggGUccgcAGGCggUGCCGCC-GCCc -3'
miRNA:   3'- -GCCACGa--CA----UUUGuuGUGGCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 11488 0.7 0.667537
Target:  5'- gGGUGUUc-GGGC-ACAUCGCCUGCUg -3'
miRNA:   3'- gCCACGAcaUUUGuUGUGGCGGACGG- -5'
19002 5' -52.5 NC_004684.1 + 61926 0.72 0.557341
Target:  5'- gGGUGCgGgccACGGCAcCCGCCggGCCu -3'
miRNA:   3'- gCCACGaCauuUGUUGU-GGCGGa-CGG- -5'
19002 5' -52.5 NC_004684.1 + 37059 0.72 0.546512
Target:  5'- --cUGCUGgc-GCAGCAgaUCGCCUGCCu -3'
miRNA:   3'- gccACGACauuUGUUGU--GGCGGACGG- -5'
19002 5' -52.5 NC_004684.1 + 28577 0.73 0.514462
Target:  5'- cCGGUGU-----GCGGCgGCUGCCUGCCg -3'
miRNA:   3'- -GCCACGacauuUGUUG-UGGCGGACGG- -5'
19002 5' -52.5 NC_004684.1 + 16487 0.82 0.165473
Target:  5'- gCGGUGUUGUuuACAGCACCGCgCuccaggUGCCg -3'
miRNA:   3'- -GCCACGACAuuUGUUGUGGCG-G------ACGG- -5'
19002 5' -52.5 NC_004684.1 + 28194 0.81 0.189638
Target:  5'- aGGcGCacGUGGACAGCACCGCCaGCCu -3'
miRNA:   3'- gCCaCGa-CAUUUGUUGUGGCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 19397 0.78 0.274214
Target:  5'- uGGUGCUGUGGGCGuuCACCGgUcGCCa -3'
miRNA:   3'- gCCACGACAUUUGUu-GUGGCgGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 59831 0.77 0.318048
Target:  5'- gCGGUGCcggUGUAGGCGaaccagaACGCCGCCacggcgGCCa -3'
miRNA:   3'- -GCCACG---ACAUUUGU-------UGUGGCGGa-----CGG- -5'
19002 5' -52.5 NC_004684.1 + 18477 0.75 0.404779
Target:  5'- uGGUGCUGUcggugucCGGCACCGCCaccGCUg -3'
miRNA:   3'- gCCACGACAuuu----GUUGUGGCGGa--CGG- -5'
19002 5' -52.5 NC_004684.1 + 20196 0.75 0.423638
Target:  5'- gGGUGuCUGgcGACAACugCGCagaGCCu -3'
miRNA:   3'- gCCAC-GACauUUGUUGugGCGga-CGG- -5'
19002 5' -52.5 NC_004684.1 + 35278 0.74 0.452888
Target:  5'- cCGGUGUuaccUGUGGACAcCACCGCCguggaGCg -3'
miRNA:   3'- -GCCACG----ACAUUUGUuGUGGCGGa----CGg -5'
19002 5' -52.5 NC_004684.1 + 54643 0.74 0.483203
Target:  5'- gGGUGUUGUGGGCGAC-CC-CCaugGCCa -3'
miRNA:   3'- gCCACGACAUUUGUUGuGGcGGa--CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.