miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19002 5' -52.5 NC_004684.1 + 856 0.67 0.866116
Target:  5'- aCGGUGCcucggcgGUGuccAGgAGCGCCGCCaggGCg -3'
miRNA:   3'- -GCCACGa------CAU---UUgUUGUGGCGGa--CGg -5'
19002 5' -52.5 NC_004684.1 + 1818 0.72 0.545433
Target:  5'- uCGGUGgUgGUGAggucGCGGCACUggccgguGCCUGCCa -3'
miRNA:   3'- -GCCACgA-CAUU----UGUUGUGG-------CGGACGG- -5'
19002 5' -52.5 NC_004684.1 + 2304 0.67 0.849423
Target:  5'- gCGGUGCUGaccgccguGCAcgucggugaccACGCCGUcuacccggaCUGCCg -3'
miRNA:   3'- -GCCACGACauu-----UGU-----------UGUGGCG---------GACGG- -5'
19002 5' -52.5 NC_004684.1 + 2366 0.69 0.743226
Target:  5'- uGGcccagGCUGgcGGCAAUGcCCGCC-GCCg -3'
miRNA:   3'- gCCa----CGACauUUGUUGU-GGCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 2616 0.66 0.903423
Target:  5'- aGGUGC-----GCAGCGuCCGCagUGCCg -3'
miRNA:   3'- gCCACGacauuUGUUGU-GGCGg-ACGG- -5'
19002 5' -52.5 NC_004684.1 + 2712 0.72 0.579172
Target:  5'- cCGGUGCcGggGGCAagugcgccACACCGCacgGCCa -3'
miRNA:   3'- -GCCACGaCauUUGU--------UGUGGCGga-CGG- -5'
19002 5' -52.5 NC_004684.1 + 3387 0.67 0.861209
Target:  5'- gGGUGUgagGUGcacaucgagaccaacGGCAcccugGCACCGCUgGCCg -3'
miRNA:   3'- gCCACGa--CAU---------------UUGU-----UGUGGCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 3444 0.69 0.732661
Target:  5'- gGcGUGCUGg----AGCACCGCCUggaacGCCg -3'
miRNA:   3'- gC-CACGACauuugUUGUGGCGGA-----CGG- -5'
19002 5' -52.5 NC_004684.1 + 3685 0.67 0.849423
Target:  5'- uGGcacGCUGgcagGAGaucgcCAGCGCCGCCgcgcugGCCg -3'
miRNA:   3'- gCCa--CGACa---UUU-----GUUGUGGCGGa-----CGG- -5'
19002 5' -52.5 NC_004684.1 + 4393 0.66 0.877217
Target:  5'- cCGGUGCaccgcgucccacucgUGU-GGCAGCACCagGCCcuUGCUg -3'
miRNA:   3'- -GCCACG---------------ACAuUUGUUGUGG--CGG--ACGG- -5'
19002 5' -52.5 NC_004684.1 + 4994 0.68 0.803818
Target:  5'- uGGUGCcgccgaggccggUGgcGACcAgGCCGCCUgaGCCg -3'
miRNA:   3'- gCCACG------------ACauUUGuUgUGGCGGA--CGG- -5'
19002 5' -52.5 NC_004684.1 + 5701 0.66 0.881061
Target:  5'- cCGGUGgaGc-AGCGcgcccucGCGCCGCagaUGCCg -3'
miRNA:   3'- -GCCACgaCauUUGU-------UGUGGCGg--ACGG- -5'
19002 5' -52.5 NC_004684.1 + 5842 0.68 0.791163
Target:  5'- gCGGUGUUcgaggaccaggcGUGcgacuggcaggccgGGCAGCACCaGCCUGaCCg -3'
miRNA:   3'- -GCCACGA------------CAU--------------UUGUUGUGG-CGGAC-GG- -5'
19002 5' -52.5 NC_004684.1 + 5964 0.68 0.77419
Target:  5'- cCGGUcagGCUGgu-GCuGC-CCgGCCUGCCa -3'
miRNA:   3'- -GCCA---CGACauuUGuUGuGG-CGGACGG- -5'
19002 5' -52.5 NC_004684.1 + 5989 0.68 0.77419
Target:  5'- -cGUGCgcgau-CAGCGCCGCC-GCCa -3'
miRNA:   3'- gcCACGacauuuGUUGUGGCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 6790 0.7 0.712317
Target:  5'- cCGGUGCacUGgacgacggccacuACGACGCCGUCgGCCu -3'
miRNA:   3'- -GCCACG--ACauu----------UGUUGUGGCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 7331 0.68 0.803818
Target:  5'- aCGcGUGCUcgGUGuGCAAC-CCGCCggugcgcGCCg -3'
miRNA:   3'- -GC-CACGA--CAUuUGUUGuGGCGGa------CGG- -5'
19002 5' -52.5 NC_004684.1 + 8301 0.67 0.838075
Target:  5'- aCGGUcaGCUGcucgaccacgcgcuUGAuCAGCugCGCCUGgCCc -3'
miRNA:   3'- -GCCA--CGAC--------------AUUuGUUGugGCGGAC-GG- -5'
19002 5' -52.5 NC_004684.1 + 8621 0.66 0.896491
Target:  5'- cCGGUGCac----CGGCACCGCCgauCCu -3'
miRNA:   3'- -GCCACGacauuuGUUGUGGCGGac-GG- -5'
19002 5' -52.5 NC_004684.1 + 10386 0.67 0.866116
Target:  5'- uCGGUGCgGgcGaccucuggcGCGACACCGgCgucgcugGCCa -3'
miRNA:   3'- -GCCACGaCauU---------UGUUGUGGCgGa------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.