miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19002 5' -52.5 NC_004684.1 + 16575 1.12 0.001601
Target:  5'- gCGGUGCUGUAAACAACACCGCCUGCCc -3'
miRNA:   3'- -GCCACGACAUUUGUUGUGGCGGACGG- -5'
19002 5' -52.5 NC_004684.1 + 20845 0.83 0.13253
Target:  5'- cCGGUGU---GGACGGCACCGCCUGCg -3'
miRNA:   3'- -GCCACGacaUUUGUUGUGGCGGACGg -5'
19002 5' -52.5 NC_004684.1 + 32622 0.82 0.156174
Target:  5'- cCGGUGCggagugGGACGACACCGCCgagaucgUGCCg -3'
miRNA:   3'- -GCCACGaca---UUUGUUGUGGCGG-------ACGG- -5'
19002 5' -52.5 NC_004684.1 + 16487 0.82 0.165473
Target:  5'- gCGGUGUUGUuuACAGCACCGCgCuccaggUGCCg -3'
miRNA:   3'- -GCCACGACAuuUGUUGUGGCG-G------ACGG- -5'
19002 5' -52.5 NC_004684.1 + 28194 0.81 0.189638
Target:  5'- aGGcGCacGUGGACAGCACCGCCaGCCu -3'
miRNA:   3'- gCCaCGa-CAUUUGUUGUGGCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 26706 0.79 0.234737
Target:  5'- aCGGUGUcguUGgcGAUGACGCCGCC-GCCg -3'
miRNA:   3'- -GCCACG---ACauUUGUUGUGGCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 19397 0.78 0.274214
Target:  5'- uGGUGCUGUGGGCGuuCACCGgUcGCCa -3'
miRNA:   3'- gCCACGACAUUUGUu-GUGGCgGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 59831 0.77 0.318048
Target:  5'- gCGGUGCcggUGUAGGCGaaccagaACGCCGCCacggcgGCCa -3'
miRNA:   3'- -GCCACG---ACAUUUGU-------UGUGGCGGa-----CGG- -5'
19002 5' -52.5 NC_004684.1 + 18454 0.77 0.334873
Target:  5'- cCGGUGaUGUcGAGCGGCACCGCgCcGCCg -3'
miRNA:   3'- -GCCACgACA-UUUGUUGUGGCG-GaCGG- -5'
19002 5' -52.5 NC_004684.1 + 55303 0.76 0.368692
Target:  5'- gCGGUGCcaacgccucGUAGGCAuccaGCGCCGCC-GCCa -3'
miRNA:   3'- -GCCACGa--------CAUUUGU----UGUGGCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 22492 0.76 0.377504
Target:  5'- gCGG-GCUGguuagGAAuccgcCGACGCCGCCUGCa -3'
miRNA:   3'- -GCCaCGACa----UUU-----GUUGUGGCGGACGg -5'
19002 5' -52.5 NC_004684.1 + 18477 0.75 0.404779
Target:  5'- uGGUGCUGUcggugucCGGCACCGCCaccGCUg -3'
miRNA:   3'- gCCACGACAuuu----GUUGUGGCGGa--CGG- -5'
19002 5' -52.5 NC_004684.1 + 20196 0.75 0.423638
Target:  5'- gGGUGuCUGgcGACAACugCGCagaGCCu -3'
miRNA:   3'- gCCAC-GACauUUGUUGugGCGga-CGG- -5'
19002 5' -52.5 NC_004684.1 + 35278 0.74 0.452888
Target:  5'- cCGGUGUuaccUGUGGACAcCACCGCCguggaGCg -3'
miRNA:   3'- -GCCACG----ACAUUUGUuGUGGCGGa----CGg -5'
19002 5' -52.5 NC_004684.1 + 34249 0.74 0.452888
Target:  5'- gGcGUGCcgGUGAGCAGCACCGU--GCCg -3'
miRNA:   3'- gC-CACGa-CAUUUGUUGUGGCGgaCGG- -5'
19002 5' -52.5 NC_004684.1 + 54643 0.74 0.483203
Target:  5'- gGGUGUUGUGGGCGAC-CC-CCaugGCCa -3'
miRNA:   3'- gCCACGACAUUUGUUGuGGcGGa--CGG- -5'
19002 5' -52.5 NC_004684.1 + 26148 0.73 0.514462
Target:  5'- aGGUGUUGgccucGAACu-CGCCGCCcugGCCg -3'
miRNA:   3'- gCCACGACa----UUUGuuGUGGCGGa--CGG- -5'
19002 5' -52.5 NC_004684.1 + 62378 0.73 0.514462
Target:  5'- gCGGcGCUG-GAGCAGCGCCuggaCCUGCUg -3'
miRNA:   3'- -GCCaCGACaUUUGUUGUGGc---GGACGG- -5'
19002 5' -52.5 NC_004684.1 + 32193 0.73 0.514462
Target:  5'- cCGGUGU---GGACucCACCGCCUGgCCa -3'
miRNA:   3'- -GCCACGacaUUUGuuGUGGCGGAC-GG- -5'
19002 5' -52.5 NC_004684.1 + 28577 0.73 0.514462
Target:  5'- cCGGUGU-----GCGGCgGCUGCCUGCCg -3'
miRNA:   3'- -GCCACGacauuUGUUG-UGGCGGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.