miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 67250 0.67 0.656375
Target:  5'- aCCAUGCCGUAcaucGcCGCCA-CGAUCaUCg -3'
miRNA:   3'- cGGUGCGGCAU----CaGCGGUaGCUGG-AG- -5'
19004 3' -57 NC_004684.1 + 67116 0.68 0.539848
Target:  5'- uGCCAggugUGCaCGaAGgccUCGCCGUCGGCCUg -3'
miRNA:   3'- -CGGU----GCG-GCaUC---AGCGGUAGCUGGAg -5'
19004 3' -57 NC_004684.1 + 67065 0.67 0.635034
Target:  5'- uUCGCGCCGUacccGGUgCgGgCGUUGGCCUCg -3'
miRNA:   3'- cGGUGCGGCA----UCA-G-CgGUAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 66975 0.78 0.145502
Target:  5'- gGCCGCGCCGaaGGUCGCCAcCGGCgCUg -3'
miRNA:   3'- -CGGUGCGGCa-UCAGCGGUaGCUG-GAg -5'
19004 3' -57 NC_004684.1 + 66864 0.67 0.613683
Target:  5'- cGCCugGCCagcacGUcAG-CGCCGguggCGACCUUc -3'
miRNA:   3'- -CGGugCGG-----CA-UCaGCGGUa---GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 66850 0.75 0.21576
Target:  5'- aCCGCGCCGaGGUCGCCGggGugCUg -3'
miRNA:   3'- cGGUGCGGCaUCAGCGGUagCugGAg -5'
19004 3' -57 NC_004684.1 + 65404 0.66 0.688203
Target:  5'- gGCgCugGCCGUGGUgcacagcgaggcCGCCGUCGcguUCUg -3'
miRNA:   3'- -CG-GugCGGCAUCA------------GCGGUAGCu--GGAg -5'
19004 3' -57 NC_004684.1 + 65069 0.66 0.688203
Target:  5'- aGCCGCagacCCGc-GUCGCgguCAUCGACCUg -3'
miRNA:   3'- -CGGUGc---GGCauCAGCG---GUAGCUGGAg -5'
19004 3' -57 NC_004684.1 + 65003 0.68 0.550249
Target:  5'- cGCCAgCGgCGUuggugguGUgGCCAUaggCGACCUCg -3'
miRNA:   3'- -CGGU-GCgGCAu------CAgCGGUA---GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 64800 0.71 0.386033
Target:  5'- aCCACGCCGuUGGU-GCUGUCGAgUUCg -3'
miRNA:   3'- cGGUGCGGC-AUCAgCGGUAGCUgGAG- -5'
19004 3' -57 NC_004684.1 + 64619 0.67 0.656375
Target:  5'- gGCCGCcgaGCCGcUGGgCGUCAUCGguGCCUg -3'
miRNA:   3'- -CGGUG---CGGC-AUCaGCGGUAGC--UGGAg -5'
19004 3' -57 NC_004684.1 + 64021 0.69 0.519254
Target:  5'- uGCCGCGCUugaccucgGU-GUCGgCgguGUCGGCCUCg -3'
miRNA:   3'- -CGGUGCGG--------CAuCAGCgG---UAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 63668 0.66 0.667018
Target:  5'- cGCCGCGCCGcgcagGCCgAUgGACCUg -3'
miRNA:   3'- -CGGUGCGGCaucagCGG-UAgCUGGAg -5'
19004 3' -57 NC_004684.1 + 63473 0.66 0.698725
Target:  5'- cGCUACGCCGccaucGGcUgGCgCGUCGGCCg- -3'
miRNA:   3'- -CGGUGCGGCa----UC-AgCG-GUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 62723 0.68 0.590269
Target:  5'- gGCCuACGCCGccuucgugcgcGUCGCCAgcaagCG-CCUCg -3'
miRNA:   3'- -CGG-UGCGGCau---------CAGCGGUa----GCuGGAG- -5'
19004 3' -57 NC_004684.1 + 61815 0.68 0.570173
Target:  5'- uGCCucaGCCGUGGUCggaggugGCCGgggccCGGCCUg -3'
miRNA:   3'- -CGGug-CGGCAUCAG-------CGGUa----GCUGGAg -5'
19004 3' -57 NC_004684.1 + 61805 0.66 0.705009
Target:  5'- gGCCcCGUCGgcaggcgGGUCGCCuugcaggcgguuuUCGuCCUCg -3'
miRNA:   3'- -CGGuGCGGCa------UCAGCGGu------------AGCuGGAG- -5'
19004 3' -57 NC_004684.1 + 61168 0.66 0.688203
Target:  5'- aGCCAC-CCGgccaGGUCGgCGggguuggUGGCCUCg -3'
miRNA:   3'- -CGGUGcGGCa---UCAGCgGUa------GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 60920 0.66 0.688203
Target:  5'- gGCCACGgCGUcgcaCGCC-UCGGCCa- -3'
miRNA:   3'- -CGGUGCgGCAuca-GCGGuAGCUGGag -5'
19004 3' -57 NC_004684.1 + 60885 0.68 0.571227
Target:  5'- cGCCACGCacCGaggcgaguuccUGGUCGCCAUCuucaaguccuGACCa- -3'
miRNA:   3'- -CGGUGCG--GC-----------AUCAGCGGUAG----------CUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.