miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19005 3' -60.8 NC_004684.1 + 56502 0.66 0.500637
Target:  5'- cGCCgACCCGGguggUCACCGGCguCGGugaggucgaguucUCCGa -3'
miRNA:   3'- -CGG-UGGGCC----AGUGGCUGguGCU-------------GGGC- -5'
19005 3' -60.8 NC_004684.1 + 7272 0.66 0.500637
Target:  5'- gGCCGCCaGGcgagaccaguucaUCGCCGcacugcACCACGcgaACCCGg -3'
miRNA:   3'- -CGGUGGgCC-------------AGUGGC------UGGUGC---UGGGC- -5'
19005 3' -60.8 NC_004684.1 + 11634 0.66 0.510371
Target:  5'- gGCCGCCugaccguCGG-CAUCGGCCACG-CCa- -3'
miRNA:   3'- -CGGUGG-------GCCaGUGGCUGGUGCuGGgc -5'
19005 3' -60.8 NC_004684.1 + 31710 0.66 0.510371
Target:  5'- aUCGCCCGGuucaUCGCCGguggcgacacaccGCCgccgACGGCCCu -3'
miRNA:   3'- cGGUGGGCC----AGUGGC-------------UGG----UGCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 15855 0.66 0.501607
Target:  5'- cGCaCGCCgaGGUCAUCGagcacguggccGCCAgCGGCCCu -3'
miRNA:   3'- -CG-GUGGg-CCAGUGGC-----------UGGU-GCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 47904 0.66 0.521168
Target:  5'- gGCagGCCaCGGUCGgCGGCCuCGGCCa- -3'
miRNA:   3'- -CGg-UGG-GCCAGUgGCUGGuGCUGGgc -5'
19005 3' -60.8 NC_004684.1 + 43542 0.66 0.521168
Target:  5'- cGCCACCuccgaaCGGUgaggUACCGGCCAUGAUg-- -3'
miRNA:   3'- -CGGUGG------GCCA----GUGGCUGGUGCUGggc -5'
19005 3' -60.8 NC_004684.1 + 57245 0.66 0.511349
Target:  5'- cCCACCUGGgcgggcggCACCGu---CGGCCCGc -3'
miRNA:   3'- cGGUGGGCCa-------GUGGCugguGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 12800 0.66 0.501607
Target:  5'- cGgCACCCc--CGCCGACgACGcGCCCGa -3'
miRNA:   3'- -CgGUGGGccaGUGGCUGgUGC-UGGGC- -5'
19005 3' -60.8 NC_004684.1 + 11592 0.66 0.511349
Target:  5'- aGCC-CgCCGGUgCGCCugGACgACGGCaCCGa -3'
miRNA:   3'- -CGGuG-GGCCA-GUGG--CUGgUGCUG-GGC- -5'
19005 3' -60.8 NC_004684.1 + 898 0.66 0.535036
Target:  5'- cGCCGcgcaacauCCUGGUCAgCuaccacuacuucaagGGCUACGACCUGa -3'
miRNA:   3'- -CGGU--------GGGCCAGUgG---------------CUGGUGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 24110 0.66 0.521168
Target:  5'- uGCCgcaGCCCGGcaCGCCGACgCAgcagcCGuACCCGc -3'
miRNA:   3'- -CGG---UGGGCCa-GUGGCUG-GU-----GC-UGGGC- -5'
19005 3' -60.8 NC_004684.1 + 63142 0.66 0.511349
Target:  5'- uCCGCCgGG-CACCGGCUcaGACuCCGa -3'
miRNA:   3'- cGGUGGgCCaGUGGCUGGugCUG-GGC- -5'
19005 3' -60.8 NC_004684.1 + 41149 0.66 0.551041
Target:  5'- cCCGCCUGGaUgGCCGAcuCCAUGAUCgGc -3'
miRNA:   3'- cGGUGGGCC-AgUGGCU--GGUGCUGGgC- -5'
19005 3' -60.8 NC_004684.1 + 45243 0.66 0.521168
Target:  5'- gGUCagGCCCGGcagccagCGCUGGUCGCGGCCCu -3'
miRNA:   3'- -CGG--UGGGCCa------GUGGCUGGUGCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 64890 0.66 0.518215
Target:  5'- cGCC-CCCGGgUACCGAaaUCagugggucuuggcgGCGACCCa -3'
miRNA:   3'- -CGGuGGGCCaGUGGCU--GG--------------UGCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 604 0.66 0.54102
Target:  5'- aCCuCCgGGcCGCCuGACCuggACGACCUGg -3'
miRNA:   3'- cGGuGGgCCaGUGG-CUGG---UGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 11393 0.66 0.511349
Target:  5'- cGUgGCCUcGUucaCGCCGACCACcuACCCGg -3'
miRNA:   3'- -CGgUGGGcCA---GUGGCUGGUGc-UGGGC- -5'
19005 3' -60.8 NC_004684.1 + 48615 0.66 0.521168
Target:  5'- cCCACCuCGGU-GCCGugCGCcucuucccaGGCCCa -3'
miRNA:   3'- cGGUGG-GCCAgUGGCugGUG---------CUGGGc -5'
19005 3' -60.8 NC_004684.1 + 14894 0.66 0.531061
Target:  5'- cGCagaACCUGGaCACCuucguGGCCAUGGuCCCGu -3'
miRNA:   3'- -CGg--UGGGCCaGUGG-----CUGGUGCU-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.