miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19005 3' -60.8 NC_004684.1 + 48539 1.1 0.000422
Target:  5'- gGCCACCCGGUCACCGACCACGACCCGa -3'
miRNA:   3'- -CGGUGGGCCAGUGGCUGGUGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 6658 0.84 0.035337
Target:  5'- gGCCACCCGGUCGCCGGgCACcucucCCCGa -3'
miRNA:   3'- -CGGUGGGCCAGUGGCUgGUGcu---GGGC- -5'
19005 3' -60.8 NC_004684.1 + 66306 0.81 0.059355
Target:  5'- cGCgGCCUGGUCACCGAUCACG-UCCa -3'
miRNA:   3'- -CGgUGGGCCAGUGGCUGGUGCuGGGc -5'
19005 3' -60.8 NC_004684.1 + 63332 0.8 0.066139
Target:  5'- aCCACCCGGUCAcCCGGCgAUGGCCgGu -3'
miRNA:   3'- cGGUGGGCCAGU-GGCUGgUGCUGGgC- -5'
19005 3' -60.8 NC_004684.1 + 2476 0.8 0.067949
Target:  5'- cGCCACCUgGGUCGCCG-CCAaGACCCa -3'
miRNA:   3'- -CGGUGGG-CCAGUGGCuGGUgCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 30493 0.8 0.069618
Target:  5'- uGCCACCggccaguccgagcUGGUUGCCGACCACGGCCa- -3'
miRNA:   3'- -CGGUGG-------------GCCAGUGGCUGGUGCUGGgc -5'
19005 3' -60.8 NC_004684.1 + 27643 0.8 0.069806
Target:  5'- uGCCACCCGGUCucaUGACCACGguggacACCCu -3'
miRNA:   3'- -CGGUGGGCCAGug-GCUGGUGC------UGGGc -5'
19005 3' -60.8 NC_004684.1 + 9732 0.79 0.079849
Target:  5'- cGCUACCCGGUgagucCAUCGACCGCGACaUCGc -3'
miRNA:   3'- -CGGUGGGCCA-----GUGGCUGGUGCUG-GGC- -5'
19005 3' -60.8 NC_004684.1 + 1239 0.79 0.084241
Target:  5'- uGCCagcaACCCGGUCACUgGACCaACGACaCCGg -3'
miRNA:   3'- -CGG----UGGGCCAGUGG-CUGG-UGCUG-GGC- -5'
19005 3' -60.8 NC_004684.1 + 15814 0.79 0.084241
Target:  5'- aCCACCCGGUCGCCG-CCGCGcaGCgCGc -3'
miRNA:   3'- cGGUGGGCCAGUGGCuGGUGC--UGgGC- -5'
19005 3' -60.8 NC_004684.1 + 41359 0.78 0.088626
Target:  5'- gGCCACCCGGuUCAUCGACCGauucaucCGGgCCGa -3'
miRNA:   3'- -CGGUGGGCC-AGUGGCUGGU-------GCUgGGC- -5'
19005 3' -60.8 NC_004684.1 + 57632 0.78 0.09625
Target:  5'- aGCCACCCGGUgaccucgcguaCACCccgauugaGGCCugGACCCc -3'
miRNA:   3'- -CGGUGGGCCA-----------GUGG--------CUGGugCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 18066 0.78 0.09625
Target:  5'- aCUGCCCGGU-GCCGACCACgGACUCGa -3'
miRNA:   3'- cGGUGGGCCAgUGGCUGGUG-CUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 16783 0.77 0.101494
Target:  5'- gGCCACgCCGaugaccCGCCGACCGcCGACCCGa -3'
miRNA:   3'- -CGGUG-GGCca----GUGGCUGGU-GCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 66663 0.77 0.109866
Target:  5'- gGCgGCCCGGUCACCGGCgGUG-CCCa -3'
miRNA:   3'- -CGgUGGGCCAGUGGCUGgUGCuGGGc -5'
19005 3' -60.8 NC_004684.1 + 58185 0.77 0.109866
Target:  5'- cCCACCCGGUCACgCGcCCACugcGCCCa -3'
miRNA:   3'- cGGUGGGCCAGUG-GCuGGUGc--UGGGc -5'
19005 3' -60.8 NC_004684.1 + 51309 0.77 0.112798
Target:  5'- uGCCAggaacuCCCGGUCACCGGCCAucagcgccaucgUGACCgGc -3'
miRNA:   3'- -CGGU------GGGCCAGUGGCUGGU------------GCUGGgC- -5'
19005 3' -60.8 NC_004684.1 + 34623 0.77 0.114893
Target:  5'- aGCCACCCGGUCauGCucacgccaccagguCGGCCGCGACguaCCGg -3'
miRNA:   3'- -CGGUGGGCCAG--UG--------------GCUGGUGCUG---GGC- -5'
19005 3' -60.8 NC_004684.1 + 47051 0.77 0.115803
Target:  5'- cCCACCCGGagGCCGACaugccCGGCCCa -3'
miRNA:   3'- cGGUGGGCCagUGGCUGgu---GCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 57797 0.76 0.118882
Target:  5'- gGCCaagACCUGGgaacCCGACCACGGCCUGg -3'
miRNA:   3'- -CGG---UGGGCCagu-GGCUGGUGCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.