miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19005 3' -60.8 NC_004684.1 + 604 0.66 0.54102
Target:  5'- aCCuCCgGGcCGCCuGACCuggACGACCUGg -3'
miRNA:   3'- cGGuGGgCCaGUGG-CUGG---UGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 707 0.69 0.383807
Target:  5'- cGCCGCCgGGUgGgaaGACCugGGCaCCGc -3'
miRNA:   3'- -CGGUGGgCCAgUgg-CUGGugCUG-GGC- -5'
19005 3' -60.8 NC_004684.1 + 871 0.69 0.359334
Target:  5'- cCCGCCgGGccgCGCUGAagGCGGCCCGc -3'
miRNA:   3'- cGGUGGgCCa--GUGGCUggUGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 898 0.66 0.535036
Target:  5'- cGCCGcgcaacauCCUGGUCAgCuaccacuacuucaagGGCUACGACCUGa -3'
miRNA:   3'- -CGGU--------GGGCCAGUgG---------------CUGGUGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 922 0.66 0.551041
Target:  5'- cGCCACCgGGUgGCgGcguggagacaacGCCGCcACCCu -3'
miRNA:   3'- -CGGUGGgCCAgUGgC------------UGGUGcUGGGc -5'
19005 3' -60.8 NC_004684.1 + 1034 0.69 0.343635
Target:  5'- -aCACCCGcGUCGCCcuGGCCGCccgcCCCGg -3'
miRNA:   3'- cgGUGGGC-CAGUGG--CUGGUGcu--GGGC- -5'
19005 3' -60.8 NC_004684.1 + 1075 0.72 0.224749
Target:  5'- gGCgGCgcuggacgugaUCGGUgACCaGGCCGCGACCCGg -3'
miRNA:   3'- -CGgUG-----------GGCCAgUGG-CUGGUGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 1235 0.76 0.125271
Target:  5'- gGCgGCCUGGUCGgucgcCCGGCCcCGGCCCa -3'
miRNA:   3'- -CGgUGGGCCAGU-----GGCUGGuGCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 1239 0.79 0.084241
Target:  5'- uGCCagcaACCCGGUCACUgGACCaACGACaCCGg -3'
miRNA:   3'- -CGG----UGGGCCAGUGG-CUGG-UGCUG-GGC- -5'
19005 3' -60.8 NC_004684.1 + 1394 0.71 0.279196
Target:  5'- gGCCGCCguugCACUGGCCAgCGACCUGg -3'
miRNA:   3'- -CGGUGGgccaGUGGCUGGU-GCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 1456 0.71 0.259962
Target:  5'- aCCACCUGGUCgagACCgGGCCggACGuGCCCGg -3'
miRNA:   3'- cGGUGGGCCAG---UGG-CUGG--UGC-UGGGC- -5'
19005 3' -60.8 NC_004684.1 + 1593 0.71 0.265616
Target:  5'- cCUGCCCGGugcacggcaucggUCGCCGugCGCGcGCCCa -3'
miRNA:   3'- cGGUGGGCC-------------AGUGGCugGUGC-UGGGc -5'
19005 3' -60.8 NC_004684.1 + 1708 0.69 0.343635
Target:  5'- -gCACCUGGcaggCACCGGCCagugccGCGACCUc -3'
miRNA:   3'- cgGUGGGCCa---GUGGCUGG------UGCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 1926 0.68 0.409361
Target:  5'- gGCCugCCGGgccuggUACCGGCgCACGgugGCCgCGc -3'
miRNA:   3'- -CGGugGGCCa-----GUGGCUG-GUGC---UGG-GC- -5'
19005 3' -60.8 NC_004684.1 + 2369 0.67 0.463506
Target:  5'- aGCCACgaGGUCGCCuauGGCCAC-ACCa- -3'
miRNA:   3'- -CGGUGggCCAGUGG---CUGGUGcUGGgc -5'
19005 3' -60.8 NC_004684.1 + 2463 0.67 0.445031
Target:  5'- gGCCAgCUCGGcgUGCCGuACCACcuGACCUGg -3'
miRNA:   3'- -CGGU-GGGCCa-GUGGC-UGGUG--CUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 2476 0.8 0.067949
Target:  5'- cGCCACCUgGGUCGCCG-CCAaGACCCa -3'
miRNA:   3'- -CGGUGGG-CCAGUGGCuGGUgCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 2842 0.75 0.158127
Target:  5'- cGCaccaACCCGGUCACCaaGGCCGcCGAgCCGc -3'
miRNA:   3'- -CGg---UGGGCCAGUGG--CUGGU-GCUgGGC- -5'
19005 3' -60.8 NC_004684.1 + 3038 0.67 0.491947
Target:  5'- gGCCgcacaacgagGCCCGGgugguggcgCGCCGAUgAuCGACCCc -3'
miRNA:   3'- -CGG----------UGGGCCa--------GUGGCUGgU-GCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 3214 0.69 0.383807
Target:  5'- -aCACCUGGgacgCGCgCGAgCACGACCUc -3'
miRNA:   3'- cgGUGGGCCa---GUG-GCUgGUGCUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.